STRINGSTRING
LOC106565230 LOC106565230 LOC106578552 LOC106578552 dis3 dis3 LOC106599369 LOC106599369 LOC106561643 LOC106561643 LOC106586484 LOC106586484 lsm3 lsm3 LOC106570129 LOC106570129 exosc7 exosc7 LOC106590312 LOC106590312 LOC106573364 LOC106573364 LOC106574282 LOC106574282 LOC106604514 LOC106604514 LOC106610231 LOC106610231 LOC106580576 LOC106580576 LOC106610200 LOC106610200 ttc37 ttc37 LOC106572753 LOC106572753 LOC106588514 LOC106588514 LOC106588242 LOC106588242 LOC106570056 LOC106570056 LOC106570868 LOC106570868 LOC106573909 LOC106573909 LOC106564785 LOC106564785 paip1 paip1 LOC106587552 LOC106587552 ENSSSAP00000093140 ENSSSAP00000093140 CNOT4 CNOT4 LOC106585873 LOC106585873 LOC106585163 LOC106585163 ENSSSAP00000090665 ENSSSAP00000090665 LOC106577251 LOC106577251 LOC106566651 LOC106566651 EDC3 EDC3 dcp2 dcp2 if4e if4e LOC100380867 LOC100380867 ENSSSAP00000080632 ENSSSAP00000080632 ENSSSAP00000080004 ENSSSAP00000080004 edc4 edc4 LOC106560824 LOC106560824 cnot2 cnot2 LOC106585172 LOC106585172 tut1 tut1 hbs1l-2 hbs1l-2 cnot6 cnot6 papd4 papd4 ENSSSAP00000073707 ENSSSAP00000073707 LOC106566970 LOC106566970 LOC106602767 LOC106602767 dcps dcps LOC106585979 LOC106585979 ENSSSAP00000069793 ENSSSAP00000069793 PABPC4 PABPC4 LOC106590454 LOC106590454 LOC106591161 LOC106591161 ENSSSAP00000067326 ENSSSAP00000067326 ENSSSAP00000066332 ENSSSAP00000066332 ENSSSAP00000065110 ENSSSAP00000065110 LOC106591903 LOC106591903 cnot8 cnot8 exosc5 exosc5 LOC106582250 LOC106582250 exosc9 exosc9 LOC106575212 LOC106575212 LOC106588450 LOC106588450 toe1 toe1 LOC106602896 LOC106602896 hbs1l hbs1l exos2 exos2 LOC106561350 LOC106561350 exosc6 exosc6 LOC106604834 LOC106604834 LOC106595781-2 LOC106595781-2 LOC106597194 LOC106597194 LOC106561715 LOC106561715 ENSSSAP00000050742 ENSSSAP00000050742 LSM1 LSM1 LOC106613629 LOC106613629 CNOT3 CNOT3 lsm2 lsm2 LOC106577905 LOC106577905 LOC106560426 LOC106560426 ENSSSAP00000043216 ENSSSAP00000043216 ENSSSAP00000043188 ENSSSAP00000043188 wdr61 wdr61 lsm7-2 lsm7-2 LOC100380868 LOC100380868 LOC106570793 LOC106570793 LOC106566956 LOC106566956 cnot9 cnot9 exosc3 exosc3 pan2 pan2 LOC106609972 LOC106609972 ENSSSAP00000036541 ENSSSAP00000036541 LOC106571976 LOC106571976 ENSSSAP00000034844 ENSSSAP00000034844 LOC106560692 LOC106560692 ENSSSAP00000033895 ENSSSAP00000033895 LOC106590917 LOC106590917 ddx6 ddx6 lsm7 lsm7 LOC106565491 LOC106565491 LOC106595781 LOC106595781 ENSSSAP00000022746 ENSSSAP00000022746 ENSSSAP00000022583 ENSSSAP00000022583 ENSSSAP00000022531 ENSSSAP00000022531 ENSSSAP00000021979 ENSSSAP00000021979 LOC106577487 LOC106577487 LOC106584061 LOC106584061 LOC106597592 LOC106597592 EXOS9 EXOS9 pan3 pan3 ENSSSAP00000018572 ENSSSAP00000018572 lsm5 lsm5 exosc1 exosc1 exosc8 exosc8 IF4EA IF4EA ENSSSAP00000014892 ENSSSAP00000014892 LOC106563639 LOC106563639 tgfi1 tgfi1 LOC106560998 LOC106560998 LOC106603492 LOC106603492 LOC106611868 LOC106611868 LOC106609840 LOC106609840 ENSSSAP00000010521 ENSSSAP00000010521 dis3l2 dis3l2 ENSSSAP00000010089 ENSSSAP00000010089 cnot3 cnot3 eif4e1a eif4e1a LOC106575761 LOC106575761 LOC106605696 LOC106605696 LOC106593600 LOC106593600 LOC106578531 LOC106578531 exos4 exos4 LOC106602922 LOC106602922 if4a3 if4a3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC106565230Eukaryotic translation initiation factor 4B-like isoform X1. (638 aa)
LOC106578552poly(A) RNA polymerase, mitochondrial-like. (582 aa)
dis3Exosome complex exonuclease RRP44 isoform X1; Belongs to the RNR ribonuclease family. (949 aa)
LOC106599369Target of EGR1 protein 1-like. (510 aa)
LOC106561643CCR4-NOT transcription complex subunit 4-like isoform X2. (857 aa)
LOC106586484CCR4-NOT transcription complex subunit 11-like isoform X1. (482 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
LOC106570129Probable ATP-dependent RNA helicase ddx6 isoform X1; Belongs to the DEAD box helicase family. (490 aa)
exosc7Exosome complex exonuclease RRP42. (316 aa)
LOC106590312U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
LOC106573364Polyadenylate-binding protein 1-A-like. (183 aa)
LOC106574282Cell differentiation protein RCD1 homolog isoform X2. (297 aa)
LOC106604514Eukaryotic Translation initiation factor 4E-1A; Belongs to the eukaryotic initiation factor 4E family. (216 aa)
LOC106610231U6 snRNA-associated Sm-like protein LSm6. (80 aa)
LOC106580576U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
LOC106610200U6 snRNA-associated Sm-like protein LSm6. (134 aa)
ttc37Tetratricopeptide repeat protein 37. (1524 aa)
LOC106572753Eukaryotic translation initiation factor 4B-like isoform X3. (293 aa)
LOC106588514Helicase SKI2W-like. (1260 aa)
LOC106588242Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (492 aa)
LOC106570056Helicase SKI2W-like isoform X1. (1284 aa)
LOC106570868CCR4-NOT transcription complex subunit 6-like isoform X1. (570 aa)
LOC106573909U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
LOC106564785Eukaryotic initiation factor 4A-III. (430 aa)
paip1Polyadenylate-binding protein-interacting protein 1. (444 aa)
LOC106587552Enhancer of mRNA-decapping protein 3-like. (477 aa)
ENSSSAP00000093140annotation not available (219 aa)
CNOT4CCR4-NOT transcription complex subunit 4-like isoform X1. (846 aa)
LOC106585873CCR4-NOT transcription complex subunit 6-like isoform X1. (600 aa)
LOC106585163Polyadenylate-binding protein-interacting protein 1-like. (445 aa)
ENSSSAP00000090665Chromosome 19 open reading frame 54. (275 aa)
LOC106577251Eukaryotic translation initiation factor 4E-like isoform X1; Belongs to the eukaryotic initiation factor 4E family. (246 aa)
LOC106566651Embryonic polyadenylate-binding protein-like isoform X1. (689 aa)
EDC3Enhancer of mRNA-decapping protein 3-like. (475 aa)
dcp2m7GpppN-mRNA hydrolase isoform X1. (402 aa)
if4eEukaryotic translation initiation factor 4E isoform X1; Belongs to the eukaryotic initiation factor 4E family. (215 aa)
LOC100380867Eukaryotic translation initiation factor 4B isoform X1. (679 aa)
ENSSSAP00000080632CCR4-NOT transcription complex, subunit 3b. (936 aa)
ENSSSAP00000080004CCR4-NOT transcription complex, subunit 1. (2324 aa)
edc4Enhancer of mRNA-decapping protein 4 isoform X1. (1429 aa)
LOC106560824Enhancer of mRNA-decapping protein 4-like isoform X4. (1392 aa)
cnot2CCR4-NOT transcription complex subunit 2 isoform X1. (552 aa)
LOC106585172U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
tut1Speckle targeted PIP5K1A-regulated poly(A) polymerase. (800 aa)
hbs1l-2HBS1-like protein. (708 aa)
cnot6CCR4-NOT transcription complex, subunit 6 isoform X2. (557 aa)
papd4poly(A) RNA polymerase GLD2. (471 aa)
ENSSSAP00000073707annotation not available (171 aa)
LOC106566970Eukaryotic translation initiation factor 4B-like isoform X6. (379 aa)
LOC106602767Protein PAT1 homolog 1-like. (808 aa)
dcpsm7GpppX diphosphatase. (330 aa)
LOC106585979LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
ENSSSAP00000069793annotation not available (79 aa)
PABPC4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (653 aa)
LOC106590454PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like isoform X1. (582 aa)
LOC106591161LOW QUALITY PROTEIN: DIS3-like exonuclease 1. (626 aa)
ENSSSAP00000067326annotation not available (94 aa)
ENSSSAP00000066332annotation not available (79 aa)
ENSSSAP00000065110annotation not available (148 aa)
LOC106591903Polyadenylate-binding protein 1-like. (278 aa)
cnot8CCR4-NOT transcription complex subunit 8. (285 aa)
exosc5Exosome complex component RRP46 isoform X1. (228 aa)
LOC106582250CCR4-NOT transcription complex subunit 11 isoform X1. (449 aa)
exosc9Exosome complex component RRP45. (524 aa)
LOC106575212Cell differentiation protein RCD1 homolog isoform X1. (301 aa)
LOC106588450CCR4-NOT transcription complex subunit 3-like isoform X3. (1007 aa)
toe1Target of EGR1 protein 1. (528 aa)
LOC106602896Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family. (445 aa)
hbs1lHBS1-like protein isoform X1. (605 aa)
exos2Exosome complex exonuclease RRP4. (296 aa)
LOC106561350CCR4-NOT transcription complex subunit 1-like isoform X11. (2376 aa)
exosc6Exosome complex exonuclease MTR3. (277 aa)
LOC106604834CCR4-NOT transcription complex subunit 6-like. (568 aa)
LOC106595781-2mRNA-decapping enzyme 1B-like. (120 aa)
LOC106597194mRNA-decapping enzyme 1B-like. (478 aa)
LOC106561715Enhancer of mRNA-decapping protein 3-like. (487 aa)
ENSSSAP00000050742annotation not available (60 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (171 aa)
LOC106613629U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
CNOT3CCR4-NOT transcription complex subunit 3. (689 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LOC106577905Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family. (422 aa)
LOC106560426Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
ENSSSAP00000043216annotation not available (220 aa)
ENSSSAP00000043188annotation not available (135 aa)
wdr61WD repeat-containing protein 61. (305 aa)
lsm7-2U6 snRNA-associated Sm-like protein LSm7. (107 aa)
LOC100380868Terminal uridylyltransferase 7. (897 aa)
LOC106570793Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (631 aa)
LOC106566956Exosome complex component RRP4-like. (247 aa)
cnot9Cell differentiation protein RCD1 homolog isoform X1. (326 aa)
exosc3Exosome complex component RRP40. (244 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1197 aa)
LOC106609972Protein PAT1 homolog 1-like isoform X1. (812 aa)
ENSSSAP00000036541annotation not available (89 aa)
LOC106571976mRNA-decapping enzyme 1A-like isoform X1. (523 aa)
ENSSSAP00000034844annotation not available (94 aa)
LOC106560692Eukaryotic initiation factor 4A-I-like. (417 aa)
ENSSSAP00000033895annotation not available (670 aa)
LOC106590917Terminal uridylyltransferase 7-like. (217 aa)
ddx6Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (493 aa)
lsm7LSM7 homolog, U6 small nuclear RNA associated. (111 aa)
LOC106565491Inner centromere protein-like. (1279 aa)
LOC106595781mRNA-decapping enzyme 1B-like. (120 aa)
ENSSSAP00000022746annotation not available (94 aa)
ENSSSAP00000022583annotation not available (94 aa)
ENSSSAP00000022531annotation not available (79 aa)
ENSSSAP00000021979annotation not available (154 aa)
LOC106577487Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)
LOC106584061Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
LOC106597592CCR4-NOT transcription complex subunit 2-like. (339 aa)
EXOS9Exosome complex component RRP45-like. (94 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (831 aa)
ENSSSAP00000018572annotation not available (153 aa)
lsm5Salmo salar U6 snRNA-associated Sm-like protein LSm5 (lsm5), mRNA. (143 aa)
exosc1Exosome complex component CSL4 isoform X1. (195 aa)
exosc8Exosome complex component RRP43. (704 aa)
IF4EAEukaryotic translation initiation factor 4E-1A; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
ENSSSAP00000014892annotation not available (99 aa)
LOC106563639Eukaryotic translation initiation factor 4E-1B-like isoform X1; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
tgfi1Protein PAT1 homolog 2 isoform X1. (595 aa)
LOC106560998CCR4-NOT transcription complex subunit 2-like isoform X3. (551 aa)
LOC106603492CCR4-NOT transcription complex subunit 7 isoform X2. (300 aa)
LOC106611868CCR4-NOT transcription complex subunit 6-like isoform X1. (583 aa)
LOC106609840CCR4-NOT transcription complex subunit 4-like. (358 aa)
ENSSSAP00000010521annotation not available (551 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1049 aa)
ENSSSAP00000010089annotation not available (75 aa)
cnot3LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3. (955 aa)
eif4e1aEukaryotic translation initiation factor 4E-1A; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
LOC106575761CCR4-NOT transcription complex subunit 10-like isoform X6. (734 aa)
LOC106605696Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)
LOC106593600poly(A)-specific ribonuclease PARN-like. (753 aa)
LOC106578531Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (639 aa)
exos4Exosome complex exonuclease RRP41. (245 aa)
LOC106602922CCR4-NOT transcription complex subunit 6-like. (560 aa)
if4a3Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...] (460 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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