50 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106575507	RCC1 and BTB domain-containing protein 1-like isoform X4. (700 aa)
	LOC106599031-2	ubiquitin-60S ribosomal protein L40-like. (128 aa)
	rev1	DNA repair protein REV1. (1451 aa)
	meiob	Meiosis-specific with OB domain-containing protein isoform X1. (464 aa)
	rfc3	Replication factor C subunit 3 isoform X1. (334 aa)
	LOC100136537	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1. (128 aa)
	LOC106570310	Replication protein A 14 kDa subunit-like. (147 aa)
	LOC100194659	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA. (128 aa)
	REV3L	DNA polymerase zeta catalytic subunit-like isoform X1. (3016 aa)
	rpa2	Replication protein A 32 kDa subunit. (278 aa)
	rfa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	LOC106599031	Ubiquitin A-52 residue ribosomal protein fusion product 1like 2. (128 aa)
	ENSSSAP00000047854	annotation not available (265 aa)
	ENSSSAP00000044108	annotation not available (850 aa)
	poli	DNA polymerase iota-like isoform X1. (761 aa)
	LOC106606528	ATPase family AAA domain-containing protein 5-like isoform X1. (1873 aa)
	LOC106562992	polyubiquitin-B. (305 aa)
	ENSSSAP00000027531	annotation not available (47 aa)
	ENSSSAP00000025590	annotation not available (47 aa)
	LOC106584674	kxDL motif-containing protein 1-like. (187 aa)
	ENSSSAP00000019926	annotation not available (202 aa)
	ENSSSAP00000019398	annotation not available (114 aa)
	ENSSSAP00000019392	Proliferating cell nuclear antigen. (218 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	RCBTB1	RCC1 and BTB domain-containing protein 1-like isoform X1. (572 aa)
	rfc2	Replication factor C subunit 2. (381 aa)
	ENSSSAP00000012232	annotation not available (93 aa)
	LOC106577118	ubiquitin-40S ribosomal protein S27a. (156 aa)
	mad2l2	Mitotic spindle assembly checkpoint protein MAD2B. (221 aa)
	LOC106564654	ATPase family AAA domain-containing protein 5-like isoform X2. (547 aa)
	LOC106588659	Replication protein A 32 kDa subunit-A-like isoform X1. (266 aa)
	LOC100194654	Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA. (173 aa)
	LOC106574681	RCC1 and BTB domain-containing protein 1-like isoform X3. (631 aa)
	LOC106586740	DNA repair protein REV1-like. (1613 aa)
	LOC106612933	Replication protein A 70 kDa DNA-binding subunit-like. (632 aa)
	ENSSSAP00000065248	annotation not available (188 aa)
	LOC106580445	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC106561074	kxDL motif-containing protein 1-like isoform X1. (185 aa)
	ENSSSAP00000071551	annotation not available (131 aa)
	rcbtb2	RCC1 and BTB domain-containing protein 2. (492 aa)
	CG024	CG024 protein precursor. (74 aa)
	ENSSSAP00000079200	Replication factor C (activator 1) 2. (372 aa)
	rfc5	Replication factor C subunit 5. (341 aa)
	LOC106607739	DNA polymerase zeta catalytic subunit-like isoform X2. (3040 aa)
	ENSSSAP00000088520	Replication factor C (activator 1) 5. (305 aa)
	LOC106605109	Replication protein A 32 kDa subunit-like. (278 aa)
	rpa3	Replication protein A3. (159 aa)
	poli-2	Salmo salar polymerase (DNA directed) iota (poli), mRNA. (761 aa)
	rfc4	Replication factor C subunit 4 isoform X1. (361 aa)
	ENSSSAP00000090923	annotation not available (91 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CG024	ENSSSAP00000019392	ENSSSAP00000074782	ENSSSAP00000019392	CG024 protein precursor.	Proliferating cell nuclear antigen.	0.849
CG024	ENSSSAP00000019398	ENSSSAP00000074782	ENSSSAP00000019398	CG024 protein precursor.	annotation not available	0.952
CG024	ENSSSAP00000019926	ENSSSAP00000074782	ENSSSAP00000019926	CG024 protein precursor.	annotation not available	0.488
CG024	ENSSSAP00000025590	ENSSSAP00000074782	ENSSSAP00000025590	CG024 protein precursor.	annotation not available	0.798
CG024	ENSSSAP00000027531	ENSSSAP00000074782	ENSSSAP00000027531	CG024 protein precursor.	annotation not available	0.798
CG024	ENSSSAP00000044108	ENSSSAP00000074782	ENSSSAP00000044108	CG024 protein precursor.	annotation not available	0.621
CG024	ENSSSAP00000047854	ENSSSAP00000074782	ENSSSAP00000047854	CG024 protein precursor.	annotation not available	0.488
CG024	ENSSSAP00000065248	ENSSSAP00000074782	ENSSSAP00000065248	CG024 protein precursor.	annotation not available	0.849
CG024	ENSSSAP00000071551	ENSSSAP00000074782	ENSSSAP00000071551	CG024 protein precursor.	annotation not available	0.952
CG024	ENSSSAP00000079200	ENSSSAP00000074782	ENSSSAP00000079200	CG024 protein precursor.	Replication factor C (activator 1) 2.	0.659
CG024	ENSSSAP00000088520	ENSSSAP00000074782	ENSSSAP00000088520	CG024 protein precursor.	Replication factor C (activator 1) 5.	0.659
CG024	ENSSSAP00000090923	ENSSSAP00000074782	ENSSSAP00000090923	CG024 protein precursor.	annotation not available	0.659
CG024	LOC100136537	ENSSSAP00000074782	ENSSSAP00000095823	CG024 protein precursor.	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1.	0.952
CG024	LOC100194659	ENSSSAP00000074782	ENSSSAP00000098259	CG024 protein precursor.	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA.	0.952
CG024	LOC106561074	ENSSSAP00000074782	ENSSSAP00000069443	CG024 protein precursor.	kxDL motif-containing protein 1-like isoform X1.	0.675
CG024	LOC106562992	ENSSSAP00000074782	ENSSSAP00000031692	CG024 protein precursor.	polyubiquitin-B.	0.730
CG024	LOC106564654	ENSSSAP00000074782	ENSSSAP00000106444	CG024 protein precursor.	ATPase family AAA domain-containing protein 5-like isoform X2.	0.621
CG024	LOC106570310	ENSSSAP00000074782	ENSSSAP00000096753	CG024 protein precursor.	Replication protein A 14 kDa subunit-like.	0.669
CG024	LOC106580445	ENSSSAP00000074782	ENSSSAP00000068146	CG024 protein precursor.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.849
CG024	LOC106584674	ENSSSAP00000074782	ENSSSAP00000023867	CG024 protein precursor.	kxDL motif-containing protein 1-like.	0.675