49 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tnfrsf13b	Tumor necrosis factor receptor superfamily member 13B isoform X1. (256 aa)
	TNFRSF19	Tumor necrosis factor receptor superfamily member 19-like. (386 aa)
	LOC106572181	Tumor necrosis factor receptor superfamily member 6B-like. (285 aa)
	LOC106567786	Uncharacterized protein LOC106567786 isoform X1. (570 aa)
	LOC106603304	ectodysplasin-A-like isoform X3; Belongs to the tumor necrosis factor family. (364 aa)
	LOC106567777	ectodysplasin-A-like isoform X1; Belongs to the tumor necrosis factor family. (365 aa)
	ENSSSAP00000085883	annotation not available (242 aa)
	LOC106582173-2	Tumor necrosis factor ligand superfamily member 11-like. (270 aa)
	LOC106603311	Tumor necrosis factor receptor superfamily member 19-like. (524 aa)
	ENSSSAP00000095655	annotation not available (440 aa)
	tnr1a	Tumor necrosis factor receptor superfamily member 1A precursor. (404 aa)
	LOC106572768	Tumor necrosis factor receptor superfamily member 14-like. (241 aa)
	LOC106572767	Tumor necrosis factor receptor superfamily member 5-like. (242 aa)
	LOC106572765	Tumor necrosis factor receptor superfamily member 14-like. (255 aa)
	ENSSSAP00000101828	annotation not available (238 aa)
	LOC106576942	ectodysplasin-A receptor-associated adapter protein-like isoform X1. (222 aa)
	LOC106575455	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	TNFRSF19-2	Tumor necrosis factor receptor superfamily member 19-like. (382 aa)
	TNFRSF19-3	Tumor necrosis factor receptor superfamily member 19-like. (327 aa)
	LOC106590519	Tumor necrosis factor ligand superfamily member 10-like isoform X2; Belongs to the tumor necrosis factor family. (289 aa)
	LOC106589221	Tumor necrosis factor receptor superfamily member 13B-like. (260 aa)
	LOC106565709	Tumor necrosis factor receptor superfamily member 1B-like. (455 aa)
	LOC106572390	Tumor necrosis factor receptor superfamily member 9-like isoform X1. (285 aa)
	cd40l	CD40 ligand; Belongs to the tumor necrosis factor family. (264 aa)
	LOC106572808	Tumor necrosis factor receptor superfamily member 14-like isoform X1. (263 aa)
	LOC106592211	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	LOC106582166-2	Tumor necrosis factor receptor superfamily member EDAR-like. (518 aa)
	LOC106582173	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (270 aa)
	tnfsf11	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family. (284 aa)
	LOC106586511	Tumor necrosis factor receptor superfamily member EDAR-like isoform X1. (512 aa)
	LOC106575188	Tumor necrosis factor receptor superfamily member 1A-like. (400 aa)
	LOC106606846	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (238 aa)
	LOC106606848	Uncharacterized protein LOC106606848; Belongs to the tumor necrosis factor family. (220 aa)
	LOC106582166	Tumor necrosis factor receptor superfamily member EDAR-like isoform X1. (518 aa)
	LOC106574239	Tumor necrosis factor receptor superfamily member 11B-like. (406 aa)
	LOC106574253-6	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	tnfrsf6b	Tumor necrosis factor receptor superfamily member 6B. (287 aa)
	LOC106574253-5	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	tnfrsf17	Tumor necrosis factor receptor superfamily member 17. (168 aa)
	LOC106598387	Tumor necrosis factor receptor superfamily member 11B-like. (315 aa)
	LOC106574253-4	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106574253-3	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106574253-2	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106578371	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family. (291 aa)
	ENSSSAP00000009531	annotation not available (144 aa)
	ENSSSAP00000009444	annotation not available (120 aa)
	LOC106574253	Tumor necrosis factor receptor superfamily member 11B-like. (328 aa)
	LOC106606565	ectodysplasin-A receptor-associated adapter protein-like. (222 aa)
	LOC106601456	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (238 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000009444	ENSSSAP00000085883	ENSSSAP00000009444	ENSSSAP00000085883	annotation not available	annotation not available	0.936
ENSSSAP00000009444	LOC106575455	ENSSSAP00000009444	ENSSSAP00000107438	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009444	LOC106582173	ENSSSAP00000009444	ENSSSAP00000056233	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009444	LOC106582173-2	ENSSSAP00000009444	ENSSSAP00000089450	annotation not available	Tumor necrosis factor ligand superfamily member 11-like.	0.936
ENSSSAP00000009444	LOC106592211	ENSSSAP00000009444	ENSSSAP00000058440	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009444	cd40l	ENSSSAP00000009444	ENSSSAP00000070829	annotation not available	CD40 ligand; Belongs to the tumor necrosis factor family.	0.789
ENSSSAP00000009444	tnfsf11	ENSSSAP00000009444	ENSSSAP00000055563	annotation not available	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009531	LOC106572390	ENSSSAP00000009531	ENSSSAP00000071605	annotation not available	Tumor necrosis factor receptor superfamily member 9-like isoform X1.	0.429
ENSSSAP00000009531	LOC106589221	ENSSSAP00000009531	ENSSSAP00000113482	annotation not available	Tumor necrosis factor receptor superfamily member 13B-like.	0.619
ENSSSAP00000009531	cd40l	ENSSSAP00000009531	ENSSSAP00000070829	annotation not available	CD40 ligand; Belongs to the tumor necrosis factor family.	0.595
ENSSSAP00000009531	tnfrsf13b	ENSSSAP00000009531	ENSSSAP00000075542	annotation not available	Tumor necrosis factor receptor superfamily member 13B isoform X1.	0.619
ENSSSAP00000085883	ENSSSAP00000009444	ENSSSAP00000085883	ENSSSAP00000009444	annotation not available	annotation not available	0.936
ENSSSAP00000085883	ENSSSAP00000095655	ENSSSAP00000085883	ENSSSAP00000095655	annotation not available	annotation not available	0.577
ENSSSAP00000085883	LOC106565709	ENSSSAP00000085883	ENSSSAP00000119990	annotation not available	Tumor necrosis factor receptor superfamily member 1B-like.	0.577
ENSSSAP00000085883	LOC106572808	ENSSSAP00000085883	ENSSSAP00000068508	annotation not available	Tumor necrosis factor receptor superfamily member 14-like isoform X1.	0.597
ENSSSAP00000085883	LOC106574239	ENSSSAP00000085883	ENSSSAP00000044719	annotation not available	Tumor necrosis factor receptor superfamily member 11B-like.	0.936
ENSSSAP00000085883	LOC106574253	ENSSSAP00000085883	ENSSSAP00000005967	annotation not available	Tumor necrosis factor receptor superfamily member 11B-like.	0.584
ENSSSAP00000085883	LOC106574253-2	ENSSSAP00000085883	ENSSSAP00000021556	annotation not available	Tumor necrosis factor receptor superfamily member 11B-like.	0.584
ENSSSAP00000085883	LOC106574253-3	ENSSSAP00000085883	ENSSSAP00000022368	annotation not available	Tumor necrosis factor receptor superfamily member 11B-like.	0.584
ENSSSAP00000085883	LOC106574253-4	ENSSSAP00000085883	ENSSSAP00000024454	annotation not available	Tumor necrosis factor receptor superfamily member 11B-like.	0.584