56 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000112721	annotation not available (332 aa)
	ENSSSAP00000044108	annotation not available (850 aa)
	DPOD1	DNA polymerase. (899 aa)
	ENSSSAP00000047854	annotation not available (265 aa)
	LOC106599031	Ubiquitin A-52 residue ribosomal protein fusion product 1like 2. (128 aa)
	rfa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	rpa2	Replication protein A 32 kDa subunit. (278 aa)
	LOC106606528	ATPase family AAA domain-containing protein 5-like isoform X1. (1873 aa)
	LOC106588659	Replication protein A 32 kDa subunit-A-like isoform X1. (266 aa)
	LOC100194654	Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA. (173 aa)
	LOC106574681	RCC1 and BTB domain-containing protein 1-like isoform X3. (631 aa)
	LOC106612933	Replication protein A 70 kDa DNA-binding subunit-like. (632 aa)
	ENSSSAP00000065248	annotation not available (188 aa)
	LOC106580445	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC106601920	DNA polymerase delta catalytic subunit-like. (681 aa)
	LOC106562992	polyubiquitin-B. (305 aa)
	LOC106584674	kxDL motif-containing protein 1-like. (187 aa)
	ENSSSAP00000019926	annotation not available (202 aa)
	ENSSSAP00000019398	annotation not available (114 aa)
	ENSSSAP00000019392	Proliferating cell nuclear antigen. (218 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC106613703	DNA polymerase epsilon subunit 4-like. (149 aa)
	RCBTB1	RCC1 and BTB domain-containing protein 1-like isoform X1. (572 aa)
	rfc2	Replication factor C subunit 2. (381 aa)
	ENSSSAP00000012232	annotation not available (93 aa)
	meiob	Meiosis-specific with OB domain-containing protein isoform X1. (464 aa)
	pold3	DNA polymerase delta subunit 3 isoform X1. (449 aa)
	pold4	DNA polymerase subunit delta-4. (125 aa)
	rfc3	Replication factor C subunit 3 isoform X1. (334 aa)
	ENSSSAP00000036217	annotation not available (352 aa)
	LOC106561074	kxDL motif-containing protein 1-like isoform X1. (185 aa)
	ENSSSAP00000071551	annotation not available (131 aa)
	rcbtb2	RCC1 and BTB domain-containing protein 2. (492 aa)
	CG024	CG024 protein precursor. (74 aa)
	LOC106580482	DNA polymerase kappa-like. (790 aa)
	ENSSSAP00000079200	Replication factor C (activator 1) 2. (372 aa)
	pole3	DNA-directed DNA polymerase epsilon 3. (151 aa)
	rfc5	Replication factor C subunit 5. (341 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2292 aa)
	ENSSSAP00000088520	Replication factor C (activator 1) 5. (305 aa)
	LOC106605109	Replication protein A 32 kDa subunit-like. (278 aa)
	rpa3	Replication protein A3. (159 aa)
	rfc4	Replication factor C subunit 4 isoform X1. (361 aa)
	ENSSSAP00000090923	annotation not available (91 aa)
	dpoe4	DNA-directed DNA polymerase epsilon 4. (130 aa)
	LOC100136537	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1. (128 aa)
	LOC106570310	Replication protein A 14 kDa subunit-like. (147 aa)
	LOC100194659	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA. (128 aa)
	pold2	DNA polymerase subunit delta-2. (500 aa)
	LOC106577118	ubiquitin-40S ribosomal protein S27a. (156 aa)
	ENSSSAP00000102908	annotation not available (83 aa)
	ENSSSAP00000104950	Polymerase (DNA directed) kappa. (401 aa)
	LOC106564654	ATPase family AAA domain-containing protein 5-like isoform X2. (547 aa)
	LOC106575507	RCC1 and BTB domain-containing protein 1-like isoform X4. (700 aa)
	LOC106599031-2	ubiquitin-60S ribosomal protein L40-like. (128 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (567 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CG024	ENSSSAP00000019392	ENSSSAP00000074782	ENSSSAP00000019392	CG024 protein precursor.	Proliferating cell nuclear antigen.	0.849
CG024	ENSSSAP00000019398	ENSSSAP00000074782	ENSSSAP00000019398	CG024 protein precursor.	annotation not available	0.952
CG024	ENSSSAP00000019926	ENSSSAP00000074782	ENSSSAP00000019926	CG024 protein precursor.	annotation not available	0.488
CG024	ENSSSAP00000036217	ENSSSAP00000074782	ENSSSAP00000036217	CG024 protein precursor.	annotation not available	0.657
CG024	ENSSSAP00000044108	ENSSSAP00000074782	ENSSSAP00000044108	CG024 protein precursor.	annotation not available	0.621
CG024	ENSSSAP00000047854	ENSSSAP00000074782	ENSSSAP00000047854	CG024 protein precursor.	annotation not available	0.488
CG024	ENSSSAP00000065248	ENSSSAP00000074782	ENSSSAP00000065248	CG024 protein precursor.	annotation not available	0.849
CG024	ENSSSAP00000071551	ENSSSAP00000074782	ENSSSAP00000071551	CG024 protein precursor.	annotation not available	0.952
CG024	ENSSSAP00000079200	ENSSSAP00000074782	ENSSSAP00000079200	CG024 protein precursor.	Replication factor C (activator 1) 2.	0.659
CG024	ENSSSAP00000088520	ENSSSAP00000074782	ENSSSAP00000088520	CG024 protein precursor.	Replication factor C (activator 1) 5.	0.659
CG024	ENSSSAP00000090923	ENSSSAP00000074782	ENSSSAP00000090923	CG024 protein precursor.	annotation not available	0.659
CG024	ENSSSAP00000104950	ENSSSAP00000074782	ENSSSAP00000104950	CG024 protein precursor.	Polymerase (DNA directed) kappa.	0.728
CG024	LOC100136537	ENSSSAP00000074782	ENSSSAP00000095823	CG024 protein precursor.	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1.	0.952
CG024	LOC100194659	ENSSSAP00000074782	ENSSSAP00000098259	CG024 protein precursor.	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA.	0.952
CG024	LOC106561074	ENSSSAP00000074782	ENSSSAP00000069443	CG024 protein precursor.	kxDL motif-containing protein 1-like isoform X1.	0.675
CG024	LOC106562992	ENSSSAP00000074782	ENSSSAP00000031692	CG024 protein precursor.	polyubiquitin-B.	0.730
CG024	LOC106564654	ENSSSAP00000074782	ENSSSAP00000106444	CG024 protein precursor.	ATPase family AAA domain-containing protein 5-like isoform X2.	0.621
CG024	LOC106570310	ENSSSAP00000074782	ENSSSAP00000096753	CG024 protein precursor.	Replication protein A 14 kDa subunit-like.	0.669
CG024	LOC106580445	ENSSSAP00000074782	ENSSSAP00000068146	CG024 protein precursor.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.849
CG024	LOC106580482	ENSSSAP00000074782	ENSSSAP00000078848	CG024 protein precursor.	DNA polymerase kappa-like.	0.728