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gtf2h3 gtf2h3 ercc1 ercc1 LOC106577118 LOC106577118 cul4b cul4b xpa-2 xpa-2 pold2 pold2 ddb1 ddb1 LOC100194659 LOC100194659 ddb2 ddb2 LOC106570310 LOC106570310 LOC100136537 LOC100136537 dpoe4 dpoe4 ENSSSAP00000090923 ENSSSAP00000090923 rfc4 rfc4 rpa3 rpa3 LOC106584761 LOC106584761 ENSSSAP00000088520 ENSSSAP00000088520 LOC106584674 LOC106584674 gtf2h5 gtf2h5 ENSSSAP00000019926 ENSSSAP00000019926 ENSSSAP00000019398 ENSSSAP00000019398 ENSSSAP00000019392 ENSSSAP00000019392 PCNA PCNA ENSSSAP00000017829 ENSSSAP00000017829 ENSSSAP00000016601 ENSSSAP00000016601 LOC106574804 LOC106574804 Ercc3 Ercc3 ercc3 ercc3 LOC106613703 LOC106613703 RCBTB1 RCBTB1 rfc2 rfc2 ercc5 ercc5 ENSSSAP00000012203 ENSSSAP00000012203 parp2 parp2 pold3 pold3 pold4 pold4 CUL4B CUL4B ENSSSAP00000005631 ENSSSAP00000005631 rbx1 rbx1 rfc3 rfc3 LOC106605109 LOC106605109 ENSSSAP00000030199 ENSSSAP00000030199 LOC106562992 LOC106562992 LOC106598394 LOC106598394 LOC106601920 LOC106601920 LOC100196672 LOC100196672 ENSSSAP00000036217 ENSSSAP00000036217 ercc4 ercc4 gtf2h1 gtf2h1 Parp3 Parp3 gtf2h4 gtf2h4 ENSSSAP00000045345 ENSSSAP00000045345 DPOD1 DPOD1 LOC106599031 LOC106599031 rfa1 rfa1 rpa2 rpa2 parp1 parp1 bivm bivm LOC106588659 LOC106588659 LOC100194654 LOC100194654 LOC106574681 LOC106574681 LOC106612933 LOC106612933 ercc2 ercc2 chd1l chd1l ENSSSAP00000065248 ENSSSAP00000065248 LOC106580445 LOC106580445 LOC106561074 LOC106561074 ENSSSAP00000071155 ENSSSAP00000071155 xpa xpa ENSSSAP00000071551 ENSSSAP00000071551 rcbtb2 rcbtb2 ENSSSAP00000074515 ENSSSAP00000074515 LOC106561926 LOC106561926 LOC106580482 LOC106580482 ENSSSAP00000079200 ENSSSAP00000079200 pole3 pole3 ENSSSAP00000079966 ENSSSAP00000079966 rbx1-2 rbx1-2 rfc5 rfc5 pole pole LOC106565577 LOC106565577 ENSSSAP00000112721 ENSSSAP00000112721 pole2 pole2 LOC106599031-2 LOC106599031-2 LOC106575507 LOC106575507 ENSSSAP00000104950 ENSSSAP00000104950 ENSSSAP00000102908 ENSSSAP00000102908
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gtf2h3General transcription factor IIH subunit 3. (303 aa)
ercc1DNA excision repair protein ERCC-1. (383 aa)
LOC106577118ubiquitin-40S ribosomal protein S27a. (156 aa)
cul4bcullin-4B isoform X1; Belongs to the cullin family. (890 aa)
xpa-2DNA repair protein complementing XP-A cells. (278 aa)
pold2DNA polymerase subunit delta-2. (500 aa)
ddb1Salmo salar DNA damage-binding protein 1 (ddb1), mRNA. (1244 aa)
LOC100194659Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA. (128 aa)
ddb2DNA damage-binding protein 2. (329 aa)
LOC106570310Replication protein A 14 kDa subunit-like. (147 aa)
LOC100136537Ubiquitin A-52 residue ribosomal protein fusion product 1like 1. (128 aa)
dpoe4DNA-directed DNA polymerase epsilon 4. (130 aa)
ENSSSAP00000090923annotation not available (91 aa)
rfc4Replication factor C subunit 4 isoform X1. (361 aa)
rpa3Replication protein A3. (159 aa)
LOC106584761General transcription factor IIH subunit 1-like. (599 aa)
ENSSSAP00000088520Replication factor C (activator 1) 5. (305 aa)
LOC106584674kxDL motif-containing protein 1-like. (187 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
ENSSSAP00000019926annotation not available (202 aa)
ENSSSAP00000019398annotation not available (114 aa)
ENSSSAP00000019392Proliferating cell nuclear antigen. (218 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ENSSSAP00000017829annotation not available (191 aa)
ENSSSAP00000016601annotation not available (175 aa)
LOC106574804cullin-4A-like; Belongs to the cullin family. (642 aa)
Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit. (100 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit. (759 aa)
LOC106613703DNA polymerase epsilon subunit 4-like. (149 aa)
RCBTB1RCC1 and BTB domain-containing protein 1-like isoform X1. (572 aa)
rfc2Replication factor C subunit 2. (381 aa)
ercc5DNA repair protein complementing XP-G cells. (775 aa)
ENSSSAP00000012203annotation not available (115 aa)
parp2Poly [ADP-ribose] polymerase. (658 aa)
pold3DNA polymerase delta subunit 3 isoform X1. (449 aa)
pold4DNA polymerase subunit delta-4. (125 aa)
CUL4Bcullin-4B-like isoform X1; Belongs to the cullin family. (899 aa)
ENSSSAP00000005631annotation not available (94 aa)
rbx1RING-box protein 1; E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase (CRLs) complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. CRLs complexes and arih1 collaborate in tandem to mediate ubiquitination of target proteins, arih1 mediating addition of the first ubiquitin on CRLs targets. The functional specificity of the E3 ubiquitin-protein ligase complexes d [...] (108 aa)
rfc3Replication factor C subunit 3 isoform X1. (334 aa)
LOC106605109Replication protein A 32 kDa subunit-like. (278 aa)
ENSSSAP00000030199annotation not available (162 aa)
LOC106562992polyubiquitin-B. (305 aa)
LOC106598394cullin-4A-like isoform X1; Belongs to the cullin family. (514 aa)
LOC106601920DNA polymerase delta catalytic subunit-like. (681 aa)
LOC100196672General transcription factor IIH subunit. (393 aa)
ENSSSAP00000036217annotation not available (352 aa)
ercc4DNA repair endonuclease XPF. (911 aa)
gtf2h1General transcription factor IIH subunit 1. (588 aa)
Parp3Poly (ADP-ribose) polymerase family, member 3. (310 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
ENSSSAP00000045345annotation not available (48 aa)
DPOD1DNA polymerase. (899 aa)
LOC106599031Ubiquitin A-52 residue ribosomal protein fusion product 1like 2. (128 aa)
rfa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
rpa2Replication protein A 32 kDa subunit. (278 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1030 aa)
bivmBasic immunoglobulin-like variable motif-containing protein isoform X1. (524 aa)
LOC106588659Replication protein A 32 kDa subunit-A-like isoform X1. (266 aa)
LOC100194654Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA. (173 aa)
LOC106574681RCC1 and BTB domain-containing protein 1-like isoform X3. (631 aa)
LOC106612933Replication protein A 70 kDa DNA-binding subunit-like. (632 aa)
ercc2TFIIH basal transcription factor complex helicase subunit. (849 aa)
chd1lchromodomain-helicase-DNA-binding protein 1-like. (982 aa)
ENSSSAP00000065248annotation not available (188 aa)
LOC106580445Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC106561074kxDL motif-containing protein 1-like isoform X1. (185 aa)
ENSSSAP00000071155annotation not available (73 aa)
xpaDNA-repair protein complementing XP-A cells homolog. (274 aa)
ENSSSAP00000071551annotation not available (131 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (492 aa)
ENSSSAP00000074515Excision repair cross-complementation group 2. (324 aa)
LOC106561926DNA damage-binding protein 1-like isoform X1. (1139 aa)
LOC106580482DNA polymerase kappa-like. (790 aa)
ENSSSAP00000079200Replication factor C (activator 1) 2. (372 aa)
pole3DNA-directed DNA polymerase epsilon 3. (151 aa)
ENSSSAP00000079966annotation not available (1325 aa)
rbx1-2Salmo salar ring-box 1 (rbx1), mRNA. (108 aa)
rfc5Replication factor C subunit 5. (341 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2292 aa)
LOC106565577Poly [ADP-ribose] polymerase. (532 aa)
ENSSSAP00000112721annotation not available (332 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (567 aa)
LOC106599031-2ubiquitin-60S ribosomal protein L40-like. (128 aa)
LOC106575507RCC1 and BTB domain-containing protein 1-like isoform X4. (700 aa)
ENSSSAP00000104950Polymerase (DNA directed) kappa. (401 aa)
ENSSSAP00000102908annotation not available (83 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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