STRINGSTRING
ENSSSAP00000094959 ENSSSAP00000094959 LOC106588473 LOC106588473 LOC106573166 LOC106573166 LOC106612892 LOC106612892 gtf2h3 gtf2h3 LOC106602577 LOC106602577 LOC100286423 LOC100286423 LOC106588516 LOC106588516 LOC106580000 LOC106580000 ENSSSAP00000098749 ENSSSAP00000098749 nelfe nelfe LOC106567465 LOC106567465 ENSSSAP00000113560 ENSSSAP00000113560 LOC106589809 LOC106589809 LOC106577550 LOC106577550 rpb4 rpb4 LOC106578728 LOC106578728 ENSSSAP00000095840 ENSSSAP00000095840 LOC106585434 LOC106585434 ENSSSAP00000094271 ENSSSAP00000094271 cdk7 cdk7 LOC106590203 LOC106590203 rpb2 rpb2 LOC106608973 LOC106608973 ENSSSAP00000091663 ENSSSAP00000091663 LOC106580766 LOC106580766 cdk9 cdk9 ENSSSAP00000089324 ENSSSAP00000089324 ENSSSAP00000089306 ENSSSAP00000089306 LOC106584402 LOC106584402 LOC106607142 LOC106607142 LOC106584761 LOC106584761 ENSSSAP00000081831 ENSSSAP00000081831 polr2i-2 polr2i-2 LOC106589136 LOC106589136 ENSSSAP00000074515 ENSSSAP00000074515 ENSSSAP00000074105 ENSSSAP00000074105 LOC106605011 LOC106605011 supt4h1 supt4h1 LOC106570026 LOC106570026 LOC106613783 LOC106613783 LOC106577941 LOC106577941 TCEA1 TCEA1 ENSSSAP00000067847 ENSSSAP00000067847 CCNQ CCNQ ENSSSAP00000066057 ENSSSAP00000066057 ENSSSAP00000065847 ENSSSAP00000065847 LOC106612273 LOC106612273 ercc2 ercc2 LOC106604162 LOC106604162 ccnt2 ccnt2 LOC106573578 LOC106573578 LOC106562324 LOC106562324 tceanc tceanc RPAB5 RPAB5 SSRP1 SSRP1 LOC106586527 LOC106586527 LOC106590672 LOC106590672 ENSSSAP00000057692 ENSSSAP00000057692 LOC106572598 LOC106572598 ENSSSAP00000056107 ENSSSAP00000056107 ENSSSAP00000056066 ENSSSAP00000056066 LOC106586522 LOC106586522 LOC106569462 LOC106569462 LOC100380775 LOC100380775 LOC106577366 LOC106577366 ENSSSAP00000045384 ENSSSAP00000045384 LOC106586308 LOC106586308 ENSSSAP00000043992 ENSSSAP00000043992 ENSSSAP00000043908 ENSSSAP00000043908 gtf2f1 gtf2f1 LOC106607271 LOC106607271 POLR2B POLR2B ccnk ccnk gtf2h4 gtf2h4 ENSSSAP00000039657 ENSSSAP00000039657 gtf2h1 gtf2h1 elob-2 elob-2 mnat1 mnat1 LOC106580016 LOC106580016 LOC106570789 LOC106570789 ENSSSAP00000034961 ENSSSAP00000034961 LOC106566308 LOC106566308 LOC100196672 LOC100196672 LOC106571114 LOC106571114 ENSSSAP00000029810 ENSSSAP00000029810 Ccnt1 Ccnt1 ENSSSAP00000029424 ENSSSAP00000029424 LOC106588593 LOC106588593 ccnh ccnh t2fb t2fb nelfa nelfa ENSSSAP00000022504 ENSSSAP00000022504 ENSSSAP00000022087 ENSSSAP00000022087 polr2h polr2h gtf2h5 gtf2h5 ENSSSAP00000021239 ENSSSAP00000021239 LOC106591826 LOC106591826 ell ell LOC106570222 LOC106570222 LOC106567670 LOC106567670 ENSSSAP00000015966 ENSSSAP00000015966 ENSSSAP00000015427 ENSSSAP00000015427 Ercc3 Ercc3 ercc3 ercc3 polr2c polr2c LOC106567679 LOC106567679 ENSSSAP00000012739 ENSSSAP00000012739 Elob Elob tceanc2 tceanc2 ENSSSAP00000007778 ENSSSAP00000007778 ENSSSAP00000007773 ENSSSAP00000007773 LOC106608676 LOC106608676 ENSSSAP00000007202 ENSSSAP00000007202 elob elob LOC106601005 LOC106601005 ENSSSAP00000002328 ENSSSAP00000002328 LOC106601222 LOC106601222 ENSSSAP00000000977 ENSSSAP00000000977 ENSSSAP00000000686 ENSSSAP00000000686 ENSSSAP00000000250 ENSSSAP00000000250 ENSSSAP00000000171 ENSSSAP00000000171
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSSSAP00000094959annotation not available (507 aa)
LOC106588473Transcription elongation factor B polypeptide 3-like. (688 aa)
LOC106573166cyclin-T2-like isoform X2; Belongs to the cyclin family. (611 aa)
LOC106612892DNA-directed RNA polymerase II subunit RPB4. (142 aa)
gtf2h3General transcription factor IIH subunit 3. (303 aa)
LOC106602577FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (670 aa)
LOC100286423FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
LOC106588516Negative elongation factor E-like. (418 aa)
LOC106580000Negative elongation factor B-like. (598 aa)
ENSSSAP00000098749annotation not available (862 aa)
nelfeNegative elongation factor E. (356 aa)
LOC106567465Transcription elongation factor SPT4-like. (120 aa)
ENSSSAP00000113560annotation not available (208 aa)
LOC106589809Transcription elongation factor B polypeptide 3-like isoform X1. (739 aa)
LOC106577550DNA-directed RNA polymerase II subunit RPB1. (1893 aa)
rpb4DNA-directed RNA polymerase II subunit RPB4. (143 aa)
LOC106578728Cyclin-dependent kinase 13-like. (1395 aa)
ENSSSAP00000095840Cyclin H. (183 aa)
LOC106585434Negative elongation factor B-like. (712 aa)
ENSSSAP00000094271annotation not available (102 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (354 aa)
LOC106590203Cyclin-dependent kinase 13-like. (1395 aa)
rpb2Salmo salar DNA-directed RNA polymerase II subunit RPB2 (rpb2), mRNA. (1230 aa)
LOC106608973FACT complex subunit SPT16. (1038 aa)
ENSSSAP00000091663annotation not available (332 aa)
LOC106580766Transcription elongation factor SPT5. (1085 aa)
cdk9Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily. (393 aa)
ENSSSAP00000089324General transcription factor IIF, polypeptide 2b. (213 aa)
ENSSSAP00000089306annotation not available (118 aa)
LOC106584402Transcription elongation factor A protein 3-like isoform X3. (421 aa)
LOC106607142DNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (151 aa)
LOC106584761General transcription factor IIH subunit 1-like. (599 aa)
ENSSSAP00000081831annotation not available (309 aa)
polr2i-2DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC106589136DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
ENSSSAP00000074515Excision repair cross-complementation group 2. (324 aa)
ENSSSAP00000074105DNA-directed RNA polymerase II subunit RPB11-a-like. (96 aa)
LOC106605011Serine/arginine repetitive matrix protein 1-like isoform X1. (762 aa)
supt4h1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
LOC106570026Transcription elongation factor B polypeptide 3-like. (671 aa)
LOC106613783RNA polymerase II elongation factor ELL-like. (684 aa)
LOC106577941FACT complex subunit SPT16-like isoform X1. (1034 aa)
TCEA1Transcription elongation factor A protein 1-like. (155 aa)
ENSSSAP00000067847Cyclin Q. (215 aa)
CCNQCyclin-related protein FAM58A. (125 aa)
ENSSSAP00000066057annotation not available (440 aa)
ENSSSAP00000065847annotation not available (153 aa)
LOC106612273DNA-directed RNA polymerase II subunit RPB7. (172 aa)
ercc2TFIIH basal transcription factor complex helicase subunit. (849 aa)
LOC106604162DNA-directed RNA polymerase II subunit RPB7-like. (178 aa)
ccnt2cyclin-T2 isoform X1; Belongs to the cyclin family. (690 aa)
LOC106573578DNA-directed RNA polymerases I, II, and III subunit RPABC1-like. (210 aa)
LOC106562324DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
tceancTranscription elongation factor A N-terminal and central domain-containing protein. (424 aa)
RPAB5DNA-directed RNA polymerases I, II, and III subunit RPABC5. (188 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (705 aa)
LOC106586527General transcription factor IIF subunit 2-like. (121 aa)
LOC106590672Transcription elongation factor B polypeptide 1 isoform X2; Belongs to the SKP1 family. (112 aa)
ENSSSAP00000057692SPT5 homolog, DSIF elongation factor subunit. (1069 aa)
LOC106572598cyclin-T1-like isoform X2; Belongs to the cyclin family. (668 aa)
ENSSSAP00000056107General transcription factor IIF, polypeptide 2b. (213 aa)
ENSSSAP00000056066annotation not available (118 aa)
LOC106586522General transcription factor IIF subunit 2-like. (131 aa)
LOC106569462DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
LOC100380775Negative elongation factor A. (551 aa)
LOC106577366PHD finger protein 3-like. (1794 aa)
ENSSSAP00000045384Polymerase (RNA) II (DNA directed) polypeptide I. (89 aa)
LOC106586308cyclin-T2-like; Belongs to the cyclin family. (704 aa)
ENSSSAP00000043992annotation not available (284 aa)
ENSSSAP00000043908annotation not available (361 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (493 aa)
LOC106607271Cyclin-dependent kinase 12-like. (1410 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ccnkcyclin-K isoform X1; Belongs to the cyclin family. (565 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
ENSSSAP00000039657annotation not available (108 aa)
gtf2h1General transcription factor IIH subunit 1. (588 aa)
elob-2Transcription elongation factor B polypeptide 2. (119 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (314 aa)
LOC106580016Probable assembly chaperone of rpl4 isoform X1. (420 aa)
LOC106570789DNA-directed RNA polymerases I, II, and III subunit RPABC4-like. (77 aa)
ENSSSAP00000034961Polymerase (RNA) II (DNA directed) polypeptide C. (274 aa)
LOC106566308Transcription elongation factor A protein 2-like isoform X1. (366 aa)
LOC100196672General transcription factor IIH subunit. (393 aa)
LOC106571114cyclin-K-like; Belongs to the cyclin family. (559 aa)
ENSSSAP00000029810annotation not available (198 aa)
Ccnt1Cyclin T1. (486 aa)
ENSSSAP00000029424annotation not available (85 aa)
LOC106588593RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1. (1037 aa)
ccnhcyclin-H isoform X1; Belongs to the cyclin family. (324 aa)
t2fbGeneral transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (275 aa)
nelfaNegative elongation factor A. (541 aa)
ENSSSAP00000022504annotation not available (181 aa)
ENSSSAP00000022087annotation not available (256 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
ENSSSAP00000021239annotation not available (181 aa)
LOC106591826FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (409 aa)
ellRNA polymerase II elongation factor ELL. (646 aa)
LOC106570222RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1. (1043 aa)
LOC106567670DNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
ENSSSAP00000015966annotation not available (921 aa)
ENSSSAP00000015427General transcription factor IIF, polypeptide 2a. (275 aa)
Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit. (100 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit. (759 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3. (275 aa)
LOC106567679Uroplakin-3b-like protein. (367 aa)
ENSSSAP00000012739annotation not available (547 aa)
ElobElongin B. (128 aa)
tceanc2Transcription elongation factor A N-terminal and central domain-containing protein 2. (243 aa)
ENSSSAP00000007778Si:dkey-12j5.1. (358 aa)
ENSSSAP00000007773annotation not available (556 aa)
LOC106608676DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1865 aa)
ENSSSAP00000007202annotation not available (185 aa)
elobTranscription Elongation factor B polypeptide 2. (119 aa)
LOC106601005Cyclin-dependent kinase 12-like isoform X2. (1403 aa)
ENSSSAP00000002328annotation not available (136 aa)
LOC106601222DNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
ENSSSAP00000000977annotation not available (500 aa)
ENSSSAP00000000686MNAT1 component of CDK activating kinase. (303 aa)
ENSSSAP00000000250annotation not available (1290 aa)
ENSSSAP00000000171PHD finger protein 3-like. (228 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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