(44 nodes) HDL assembly network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106580921	Alpha-2-macroglobulin-like. (1445 aa)
	LOC106585210	ATP-binding cassette sub-family A member 2-like isoform X7. (2460 aa)
	LOC106590296	Patched domain-containing protein 3-like. (915 aa)
	LOC106599249	Alpha-2-macroglobulin-like. (1359 aa)
	LOC106580625	ATP-binding cassette sub-family A member 2-like isoform X8. (2602 aa)
	ENSSSAP00000044399	annotation not available (103 aa)
	LOC106571456	Patched domain-containing protein 1. (920 aa)
	LOC106604636	ATP-binding cassette sub-family A member 1-like. (2364 aa)
	LOC106570847	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (432 aa)
	ENSSSAP00000000311	CAMP-dependent protein kinase catalytic subunit alpha-like. (216 aa)
	LOC106598503	Murinoglobulin-2-like. (744 aa)
	LOC106597789	Alpha-2-macroglobulin-like. (1121 aa)
	LOC106612537	Alpha-2-macroglobulin-like. (1393 aa)
	LOC106611439	Pleckstrin homology domain-containing family D member 1-like. (468 aa)
	ENSSSAP00000012817	annotation not available (495 aa)
	LOC106579703	Patched domain-containing protein 3-like. (817 aa)
	LOC106593376	cAMP-dependent protein kinase catalytic subunit alpha-like. (487 aa)
	LOC106609866	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (679 aa)
	LOC106599750	cAMP-dependent protein kinase catalytic subunit beta-like isoform X2; Belongs to the protein kinase superfamily. (422 aa)
	LOC106563940	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (665 aa)
	Ptchd1	Patched domain containing 1. (251 aa)
	ENSSSAP00000080512	annotation not available (185 aa)
	ptchd1	Patched domain-containing protein 1. (545 aa)
	LOC106580465	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (850 aa)
	LOC106580937	Alpha-2-macroglobulin-like. (1484 aa)
	LOC106611642	ATP-binding cassette sub-family A member 1-like. (2300 aa)
	LOC106602602	LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 1-like. (2268 aa)
	LOC106611662	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (766 aa)
	LOC106602527	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (674 aa)
	LOC106607868	Patched domain-containing protein 1-like. (920 aa)
	LOC106604662	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (736 aa)
	LOC106571371	Acid sphingomyelinase-like phosphodiesterase. (443 aa)
	ENSSSAP00000118131	Sphingomyelin phosphodiesterase acid like 3A. (360 aa)
	LOC106590298	Patched domain-containing protein 3-like isoform X1. (1015 aa)
	zdhhc8	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (784 aa)
	prkacb	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily. (386 aa)
	LOC106590080	Patched domain-containing protein 3-like isoform X1. (911 aa)
	LOC106609880	ATP-binding cassette sub-family A member 1-like isoform X2. (2279 aa)
	LOC106568176	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (697 aa)
	LOC106598580	Patched domain-containing protein 3-like. (844 aa)
	LOC106594238	Alpha-2-macroglobulin-like protein 1. (1308 aa)
	LOC106598208	Pregnancy zone protein-like. (1143 aa)
	LOC106569146	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily. (370 aa)
	LOC106606839	cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily. (381 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000000311	LOC106580625	ENSSSAP00000000311	ENSSSAP00000044629	CAMP-dependent protein kinase catalytic subunit alpha-like.	ATP-binding cassette sub-family A member 2-like isoform X8.	0.401
ENSSSAP00000000311	LOC106585210	ENSSSAP00000000311	ENSSSAP00000053958	CAMP-dependent protein kinase catalytic subunit alpha-like.	ATP-binding cassette sub-family A member 2-like isoform X7.	0.401
ENSSSAP00000000311	LOC106602602	ENSSSAP00000000311	ENSSSAP00000094849	CAMP-dependent protein kinase catalytic subunit alpha-like.	LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 1-like.	0.401
ENSSSAP00000000311	LOC106604636	ENSSSAP00000000311	ENSSSAP00000039652	CAMP-dependent protein kinase catalytic subunit alpha-like.	ATP-binding cassette sub-family A member 1-like.	0.401
ENSSSAP00000000311	LOC106609880	ENSSSAP00000000311	ENSSSAP00000072463	CAMP-dependent protein kinase catalytic subunit alpha-like.	ATP-binding cassette sub-family A member 1-like isoform X2.	0.401
ENSSSAP00000000311	LOC106611642	ENSSSAP00000000311	ENSSSAP00000092918	CAMP-dependent protein kinase catalytic subunit alpha-like.	ATP-binding cassette sub-family A member 1-like.	0.401
ENSSSAP00000044399	LOC106580625	ENSSSAP00000044399	ENSSSAP00000044629	annotation not available	ATP-binding cassette sub-family A member 2-like isoform X8.	0.407
ENSSSAP00000044399	LOC106585210	ENSSSAP00000044399	ENSSSAP00000053958	annotation not available	ATP-binding cassette sub-family A member 2-like isoform X7.	0.407
ENSSSAP00000044399	LOC106602602	ENSSSAP00000044399	ENSSSAP00000094849	annotation not available	LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 1-like.	0.407
ENSSSAP00000044399	LOC106604636	ENSSSAP00000044399	ENSSSAP00000039652	annotation not available	ATP-binding cassette sub-family A member 1-like.	0.407
ENSSSAP00000044399	LOC106609880	ENSSSAP00000044399	ENSSSAP00000072463	annotation not available	ATP-binding cassette sub-family A member 1-like isoform X2.	0.407
ENSSSAP00000044399	LOC106611642	ENSSSAP00000044399	ENSSSAP00000092918	annotation not available	ATP-binding cassette sub-family A member 1-like.	0.407
LOC106569146	LOC106580625	ENSSSAP00000117384	ENSSSAP00000044629	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	ATP-binding cassette sub-family A member 2-like isoform X8.	0.401
LOC106569146	LOC106585210	ENSSSAP00000117384	ENSSSAP00000053958	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	ATP-binding cassette sub-family A member 2-like isoform X7.	0.401
LOC106569146	LOC106602602	ENSSSAP00000117384	ENSSSAP00000094849	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 1-like.	0.401
LOC106569146	LOC106604636	ENSSSAP00000117384	ENSSSAP00000039652	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	ATP-binding cassette sub-family A member 1-like.	0.401
LOC106569146	LOC106609880	ENSSSAP00000117384	ENSSSAP00000072463	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	ATP-binding cassette sub-family A member 1-like isoform X2.	0.401
LOC106569146	LOC106611642	ENSSSAP00000117384	ENSSSAP00000092918	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	ATP-binding cassette sub-family A member 1-like.	0.401
LOC106570847	LOC106580625	ENSSSAP00000036401	ENSSSAP00000044629	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ATP-binding cassette sub-family A member 2-like isoform X8.	0.407
LOC106570847	LOC106585210	ENSSSAP00000036401	ENSSSAP00000053958	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	ATP-binding cassette sub-family A member 2-like isoform X7.	0.407