11 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106566345	methyl-CpG-binding protein 2-like. (680 aa)
	LOC106607439	Parvalbumin-7-like. (152 aa)
	LOC106587828	Paired amphipathic helix protein Sin3a-like. (154 aa)
	LOC106596941	Huntingtin-like isoform X2. (292 aa)
	sin3a	Paired amphipathic helix protein Sin3a isoform X3. (1312 aa)
	LOC106572920	methyl-CpG-binding protein 2-like isoform X1. (668 aa)
	prva	Parvalbumin alpha isoform X1; Belongs to the parvalbumin family. (109 aa)
	ENSSSAP00000054055	annotation not available (114 aa)
	LOC106580468	Microprocessor complex subunit DGCR8-like. (798 aa)
	LOC106587652	Paired amphipathic helix protein Sin3a-like isoform X1. (1297 aa)
	DGCR8	Microprocessor complex subunit DGCR8 isoform X2. (805 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DGCR8	LOC106566345	ENSSSAP00000119437	ENSSSAP00000061807	Microprocessor complex subunit DGCR8 isoform X2.	methyl-CpG-binding protein 2-like.	0.753
DGCR8	LOC106572920	ENSSSAP00000119437	ENSSSAP00000044090	Microprocessor complex subunit DGCR8 isoform X2.	methyl-CpG-binding protein 2-like isoform X1.	0.753
ENSSSAP00000054055	LOC106566345	ENSSSAP00000054055	ENSSSAP00000061807	annotation not available	methyl-CpG-binding protein 2-like.	0.835
ENSSSAP00000054055	LOC106572920	ENSSSAP00000054055	ENSSSAP00000044090	annotation not available	methyl-CpG-binding protein 2-like isoform X1.	0.835
LOC106566345	DGCR8	ENSSSAP00000061807	ENSSSAP00000119437	methyl-CpG-binding protein 2-like.	Microprocessor complex subunit DGCR8 isoform X2.	0.753
LOC106566345	ENSSSAP00000054055	ENSSSAP00000061807	ENSSSAP00000054055	methyl-CpG-binding protein 2-like.	annotation not available	0.835
LOC106566345	LOC106580468	ENSSSAP00000061807	ENSSSAP00000089795	methyl-CpG-binding protein 2-like.	Microprocessor complex subunit DGCR8-like.	0.753
LOC106566345	LOC106587652	ENSSSAP00000061807	ENSSSAP00000107397	methyl-CpG-binding protein 2-like.	Paired amphipathic helix protein Sin3a-like isoform X1.	0.835
LOC106566345	LOC106587828	ENSSSAP00000061807	ENSSSAP00000020184	methyl-CpG-binding protein 2-like.	Paired amphipathic helix protein Sin3a-like.	0.835
LOC106566345	LOC106596941	ENSSSAP00000061807	ENSSSAP00000035132	methyl-CpG-binding protein 2-like.	Huntingtin-like isoform X2.	0.674
LOC106566345	LOC106607439	ENSSSAP00000061807	ENSSSAP00000006522	methyl-CpG-binding protein 2-like.	Parvalbumin-7-like.	0.660
LOC106566345	prva	ENSSSAP00000061807	ENSSSAP00000047641	methyl-CpG-binding protein 2-like.	Parvalbumin alpha isoform X1; Belongs to the parvalbumin family.	0.660
LOC106566345	sin3a	ENSSSAP00000061807	ENSSSAP00000042032	methyl-CpG-binding protein 2-like.	Paired amphipathic helix protein Sin3a isoform X3.	0.835
LOC106572920	DGCR8	ENSSSAP00000044090	ENSSSAP00000119437	methyl-CpG-binding protein 2-like isoform X1.	Microprocessor complex subunit DGCR8 isoform X2.	0.753
LOC106572920	ENSSSAP00000054055	ENSSSAP00000044090	ENSSSAP00000054055	methyl-CpG-binding protein 2-like isoform X1.	annotation not available	0.835
LOC106572920	LOC106580468	ENSSSAP00000044090	ENSSSAP00000089795	methyl-CpG-binding protein 2-like isoform X1.	Microprocessor complex subunit DGCR8-like.	0.753
LOC106572920	LOC106587652	ENSSSAP00000044090	ENSSSAP00000107397	methyl-CpG-binding protein 2-like isoform X1.	Paired amphipathic helix protein Sin3a-like isoform X1.	0.835
LOC106572920	LOC106587828	ENSSSAP00000044090	ENSSSAP00000020184	methyl-CpG-binding protein 2-like isoform X1.	Paired amphipathic helix protein Sin3a-like.	0.835
LOC106572920	LOC106596941	ENSSSAP00000044090	ENSSSAP00000035132	methyl-CpG-binding protein 2-like isoform X1.	Huntingtin-like isoform X2.	0.674
LOC106572920	LOC106607439	ENSSSAP00000044090	ENSSSAP00000006522	methyl-CpG-binding protein 2-like isoform X1.	Parvalbumin-7-like.	0.660