STRINGSTRING
LOC100136370 LOC100136370 pgap1 pgap1 rho rho LOC106602722 LOC106602722 RHO RHO casp3 casp3 LOC106612018 LOC106612018
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100136370Rhodopsin. (354 aa)
pgap1GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi. (1063 aa)
rhoRhodopsin. (343 aa)
LOC106602722Caspase-3-like; Belongs to the peptidase C14A family. (284 aa)
RHORhodopsin. (354 aa)
casp3Caspase 3B; Belongs to the peptidase C14A family. (311 aa)
LOC106612018Caspase-3-like; Belongs to the peptidase C14A family. (283 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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