40 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ddx55	RNA helicase. (644 aa)
	LOC106601397	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family. (634 aa)
	bafb	Barrier-to-autointegration factor B isoform X1. (97 aa)
	sh21a	SH2 domain-containing protein 1A. (138 aa)
	LOC106597917	CD209 antigen-like protein A. (174 aa)
	RHO	Rhodopsin. (354 aa)
	LOC100196652	Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (402 aa)
	rsad2	Radical S-adenosyl methionine domain-containing protein 2 precursor. (357 aa)
	ddx31	RNA helicase. (740 aa)
	LOC100136515	CD3gammadelta-A precursor. (198 aa)
	LOC106590165	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (458 aa)
	LOC106611762	Serine protease; Belongs to the peptidase S1B family. (390 aa)
	LOC106604707	Serine protease; Belongs to the peptidase S1B family. (394 aa)
	LOC106567109	Lymphocyte G0/G1 switch protein 2. (112 aa)
	LOC106578037	Asialoglycoprotein receptor 1-like isoform X2. (337 aa)
	c209a	CD209 antigen-like protein A. (227 aa)
	rig-I	Retinoic acid-inducible gene-I. (557 aa)
	DDX5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (659 aa)
	rho	Rhodopsin. (343 aa)
	LOC106566099	Radical S-adenosyl methionine domain-containing protein 2-like. (353 aa)
	LOC106563483	Barrier-to-autointegration factor-like. (90 aa)
	peci	Peroxisomal 3,2-trans-enoyl-CoA isomerase isoform X1. (387 aa)
	LOC106594559	Barrier-to-autointegration factor-like. (97 aa)
	LOC106600963	Interferon a3-like isoform X1. (175 aa)
	LOC106595579	Radical S-adenosyl methionine domain-containing protein 2. (357 aa)
	DDX18	RNA helicase. (663 aa)
	ef1a	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (495 aa)
	LOC106590083	enoyl-CoA delta isomerase 2, mitochondrial-like isoform X1. (390 aa)
	LOC100380648	RNA helicase. (685 aa)
	LOC106567721	RNA helicase. (856 aa)
	LOC106576720	Barrier-to-autointegration factor-like protein. (90 aa)
	LOC106603147	Barrier-to-autointegration factor. (90 aa)
	graa	Granzyme A-like; Belongs to the peptidase S1 family. (262 aa)
	LOC106602581	Lectin-like. (246 aa)
	LOC106586700	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
	LOC106576970	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (495 aa)
	LOC100136370	Rhodopsin. (354 aa)
	LOC100136525	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (463 aa)
	BCL2	Apoptosis regulator Bcl-2-like. (230 aa)
	LOC106565122	Lymphocyte G0/G1 switch protein 2. (116 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX18	DDX5	ENSSSAP00000066208	ENSSSAP00000044729	RNA helicase.	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.753
DDX18	LOC106566099	ENSSSAP00000066208	ENSSSAP00000047224	RNA helicase.	Radical S-adenosyl methionine domain-containing protein 2-like.	0.438
DDX18	LOC106567721	ENSSSAP00000066208	ENSSSAP00000078732	RNA helicase.	RNA helicase.	0.996
DDX18	LOC106595579	ENSSSAP00000066208	ENSSSAP00000058894	RNA helicase.	Radical S-adenosyl methionine domain-containing protein 2.	0.439
DDX18	LOC106601397	ENSSSAP00000066208	ENSSSAP00000001672	RNA helicase.	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	0.751
DDX18	ddx31	ENSSSAP00000066208	ENSSSAP00000018391	RNA helicase.	RNA helicase.	0.924
DDX18	ddx55	ENSSSAP00000066208	ENSSSAP00000011002	RNA helicase.	RNA helicase.	0.965
DDX18	rig-I	ENSSSAP00000066208	ENSSSAP00000042094	RNA helicase.	Retinoic acid-inducible gene-I.	0.588
DDX18	rsad2	ENSSSAP00000066208	ENSSSAP00000016507	RNA helicase.	Radical S-adenosyl methionine domain-containing protein 2 precursor.	0.438
DDX5	DDX18	ENSSSAP00000044729	ENSSSAP00000066208	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	RNA helicase.	0.753
DDX5	LOC100380648	ENSSSAP00000044729	ENSSSAP00000072910	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	RNA helicase.	0.753
DDX5	LOC106567721	ENSSSAP00000044729	ENSSSAP00000078732	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	RNA helicase.	0.722
DDX5	LOC106576970	ENSSSAP00000044729	ENSSSAP00000110038	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.595
DDX5	LOC106601397	ENSSSAP00000044729	ENSSSAP00000001672	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	0.901
DDX5	ddx31	ENSSSAP00000044729	ENSSSAP00000018391	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	RNA helicase.	0.684
DDX5	ddx55	ENSSSAP00000044729	ENSSSAP00000011002	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	RNA helicase.	0.570
LOC100136370	RHO	ENSSSAP00000111426	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.916
LOC100136515	LOC106590083	ENSSSAP00000020511	ENSSSAP00000070867	CD3gammadelta-A precursor.	enoyl-CoA delta isomerase 2, mitochondrial-like isoform X1.	0.456
LOC100136515	peci	ENSSSAP00000020511	ENSSSAP00000056967	CD3gammadelta-A precursor.	Peroxisomal 3,2-trans-enoyl-CoA isomerase isoform X1.	0.456
LOC100136515	sh21a	ENSSSAP00000020511	ENSSSAP00000004533	CD3gammadelta-A precursor.	SH2 domain-containing protein 1A.	0.834