43 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106574396	Toll-like receptor 13. (931 aa)
	LOC106584161	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	sox6	Transcription factor SOX-6. (817 aa)
	LOC106560258-2	Zygote arrest protein 1-like isoform X2. (351 aa)
	LOC106567470	Forkhead box protein L2-like. (294 aa)
	LOC106573710	Interleukin-34-like. (211 aa)
	LOC106602581	Lectin-like. (246 aa)
	LOC106582839	VIP peptides-like. (203 aa)
	LOC106578423	Ropporin-1-like protein. (186 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	LOC106589333	Transcription factor Sox-8-like. (465 aa)
	zar1	Zygote arrest protein 1. (333 aa)
	LOC106590795	Transforming growth factor beta; Belongs to the TGF-beta family. (409 aa)
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	CSF1R-2	Macrophage colony-stimulating factor 1 receptor 1-like isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1091 aa)
	LOC106576326	Myogenic factor. (239 aa)
	IGFBP2	Insulin-like growth factor-binding protein 2-A. (224 aa)
	LOC106590153	Transcription factor Sox-17-alpha-A-like. (390 aa)
	LOC106561372	Wee1-like protein kinase. (558 aa)
	dnali1	Axonemal dynein light intermediate polypeptide 1. (307 aa)
	prl	Prolactin. (190 aa)
	tlr3	Toll-like receptor 3 isoform X1; Belongs to the Toll-like receptor family. (913 aa)
	ENSSSAP00000034894	Dynein, axonemal, light intermediate chain 1. (154 aa)
	LOC106604233	Growth/differentiation factor 9-like isoform X1. (445 aa)
	LOC106578689	Transcription factor Sox-17-alpha-A-like. (393 aa)
	GDF9	Growth/differentiation factor 9-like. (444 aa)
	traf2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (519 aa)
	dmrt3	Doublesex- and mab-3-related transcription factor 3. (487 aa)
	Sox6	Transcription factor SOX5/6/13 (SOX group D). (244 aa)
	LOC106608297	Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
	il34	Interleukin-34. (227 aa)
	ropn1l	Ropporin-1-like protein isoform X2. (229 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	LOC106604392	Transforming growth factor beta; Belongs to the TGF-beta family. (433 aa)
	TLR-2	Toll-like receptor 13. (572 aa)
	LOC106605021	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106604777	Toll-like receptor 6. (837 aa)
	LOC106586001	Doublesex- and mab-3-related transcription factor 1-like. (188 aa)
	traf3	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (576 aa)
	LOC106612106	Transforming growth factor beta; Belongs to the TGF-beta family. (425 aa)
	myf5	Myogenic factor. (297 aa)
	LOC100136580	Prolactin isoform X1. (220 aa)
	LOC106600975	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (1023 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSF1R-2	LOC106573710	ENSSSAP00000009047	ENSSSAP00000086179	Macrophage colony-stimulating factor 1 receptor 1-like isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Interleukin-34-like.	0.996
CSF1R-2	il34	ENSSSAP00000009047	ENSSSAP00000053012	Macrophage colony-stimulating factor 1 receptor 1-like isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Interleukin-34.	0.996
CSF1R-2	tlr3	ENSSSAP00000009047	ENSSSAP00000032759	Macrophage colony-stimulating factor 1 receptor 1-like isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Toll-like receptor 3 isoform X1; Belongs to the Toll-like receptor family.	0.515
ENSSSAP00000034894	LOC106561372	ENSSSAP00000034894	ENSSSAP00000020632	Dynein, axonemal, light intermediate chain 1.	Wee1-like protein kinase.	0.432
ENSSSAP00000034894	LOC106578423	ENSSSAP00000034894	ENSSSAP00000109592	Dynein, axonemal, light intermediate chain 1.	Ropporin-1-like protein.	0.730
ENSSSAP00000034894	LOC106586001	ENSSSAP00000034894	ENSSSAP00000074541	Dynein, axonemal, light intermediate chain 1.	Doublesex- and mab-3-related transcription factor 1-like.	0.424
ENSSSAP00000034894	Sox6	ENSSSAP00000034894	ENSSSAP00000050176	Dynein, axonemal, light intermediate chain 1.	Transcription factor SOX5/6/13 (SOX group D).	0.522
ENSSSAP00000034894	ropn1l	ENSSSAP00000034894	ENSSSAP00000053077	Dynein, axonemal, light intermediate chain 1.	Ropporin-1-like protein isoform X2.	0.730
ENSSSAP00000034894	sox6	ENSSSAP00000034894	ENSSSAP00000083737	Dynein, axonemal, light intermediate chain 1.	Transcription factor SOX-6.	0.522
GDF9	LOC106560258-2	ENSSSAP00000040053	ENSSSAP00000084969	Growth/differentiation factor 9-like.	Zygote arrest protein 1-like isoform X2.	0.602
GDF9	LOC106561372	ENSSSAP00000040053	ENSSSAP00000020632	Growth/differentiation factor 9-like.	Wee1-like protein kinase.	0.531
GDF9	LOC106563563	ENSSSAP00000040053	ENSSSAP00000109831	Growth/differentiation factor 9-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.402
GDF9	LOC106567470	ENSSSAP00000040053	ENSSSAP00000085333	Growth/differentiation factor 9-like.	Forkhead box protein L2-like.	0.597
GDF9	LOC106578689	ENSSSAP00000040053	ENSSSAP00000038673	Growth/differentiation factor 9-like.	Transcription factor Sox-17-alpha-A-like.	0.622
GDF9	LOC106586001	ENSSSAP00000040053	ENSSSAP00000074541	Growth/differentiation factor 9-like.	Doublesex- and mab-3-related transcription factor 1-like.	0.521
GDF9	LOC106590153	ENSSSAP00000040053	ENSSSAP00000018864	Growth/differentiation factor 9-like.	Transcription factor Sox-17-alpha-A-like.	0.622
GDF9	LOC106604233	ENSSSAP00000040053	ENSSSAP00000036787	Growth/differentiation factor 9-like.	Growth/differentiation factor 9-like isoform X1.	0.900
GDF9	zar1	ENSSSAP00000040053	ENSSSAP00000113545	Growth/differentiation factor 9-like.	Zygote arrest protein 1.	0.597
IGFBP2	LOC106582839	ENSSSAP00000014564	ENSSSAP00000108036	Insulin-like growth factor-binding protein 2-A.	VIP peptides-like.	0.402
LOC100136559	LOC106563563	ENSSSAP00000004983	ENSSSAP00000109831	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900