24 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106580445	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	txnip	Thioredoxin-interacting protein. (396 aa)
	LOC106602690	Plasma protease C1 inhibitor-like; Belongs to the serpin family. (605 aa)
	dhcr7	7-dehydrocholesterol reductase. (489 aa)
	LOC106581203	Diablo homolog, mitochondrial-like. (265 aa)
	eif2ak2	Interferon-induced, double-stranded RNA-activated protein kinase isoform X2. (730 aa)
	LOC106612804	Diablo homolog, mitochondrial-like. (253 aa)
	LOC106570200	Thioredoxin-interacting protein-like. (396 aa)
	myc-2	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (398 aa)
	fdft1	Squalene synthase isoform X1. (458 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	ENSSSAP00000019392	Proliferating cell nuclear antigen. (218 aa)
	ILK	Integrin-linked protein kinase. (485 aa)
	LOC106609962	Plasma protease C1 inhibitor-like; Belongs to the serpin family. (627 aa)
	LOC100136459	Caspase 8-like protein. (499 aa)
	LOC106603345	Diablo homolog, mitochondrial-like. (233 aa)
	slc27a2	Very long-chain acyl-CoA synthetase. (661 aa)
	creb1	Cyclic AMP-responsive element-binding protein 1 isoform X3. (328 aa)
	LOC106587139	7-dehydrocholesterol reductase-like. (479 aa)
	LOC106613963	Transcription factor AP-1-like; Belongs to the bZIP family. (327 aa)
	myc	Viral myc transforming protein. (382 aa)
	jun	Transcription factor AP-1; Belongs to the bZIP family. (316 aa)
	LOC106584280	Transcription factor AP-1-like isoform X1; Belongs to the bZIP family. (328 aa)
	ilk	Salmo salar integrin linked kinase (ilk), mRNA. (451 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136459	LOC106581203	ENSSSAP00000034747	ENSSSAP00000094591	Caspase 8-like protein.	Diablo homolog, mitochondrial-like.	0.596
LOC100136459	LOC106603345	ENSSSAP00000034747	ENSSSAP00000040200	Caspase 8-like protein.	Diablo homolog, mitochondrial-like.	0.596
LOC100136459	LOC106612804	ENSSSAP00000034747	ENSSSAP00000105620	Caspase 8-like protein.	Diablo homolog, mitochondrial-like.	0.596
LOC106570200	slc27a2	ENSSSAP00000013116	ENSSSAP00000043000	Thioredoxin-interacting protein-like.	Very long-chain acyl-CoA synthetase.	0.552
LOC106570200	txnip	ENSSSAP00000013116	ENSSSAP00000070791	Thioredoxin-interacting protein-like.	Thioredoxin-interacting protein.	0.900
LOC106580445	PCNA	ENSSSAP00000068146	ENSSSAP00000018360	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900
LOC106581203	LOC100136459	ENSSSAP00000094591	ENSSSAP00000034747	Diablo homolog, mitochondrial-like.	Caspase 8-like protein.	0.596
LOC106581203	LOC106603345	ENSSSAP00000094591	ENSSSAP00000040200	Diablo homolog, mitochondrial-like.	Diablo homolog, mitochondrial-like.	0.903
LOC106581203	LOC106612804	ENSSSAP00000094591	ENSSSAP00000105620	Diablo homolog, mitochondrial-like.	Diablo homolog, mitochondrial-like.	0.901
LOC106581203	fdft1	ENSSSAP00000094591	ENSSSAP00000016381	Diablo homolog, mitochondrial-like.	Squalene synthase isoform X1.	0.403
LOC106581203	slc27a2	ENSSSAP00000094591	ENSSSAP00000043000	Diablo homolog, mitochondrial-like.	Very long-chain acyl-CoA synthetase.	0.567
LOC106584280	myc-2	ENSSSAP00000062681	ENSSSAP00000014773	Transcription factor AP-1-like isoform X1; Belongs to the bZIP family.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.412
LOC106587139	fdft1	ENSSSAP00000054893	ENSSSAP00000016381	7-dehydrocholesterol reductase-like.	Squalene synthase isoform X1.	0.777
LOC106602690	slc27a2	ENSSSAP00000072208	ENSSSAP00000043000	Plasma protease C1 inhibitor-like; Belongs to the serpin family.	Very long-chain acyl-CoA synthetase.	0.408
LOC106603345	LOC100136459	ENSSSAP00000040200	ENSSSAP00000034747	Diablo homolog, mitochondrial-like.	Caspase 8-like protein.	0.596
LOC106603345	LOC106581203	ENSSSAP00000040200	ENSSSAP00000094591	Diablo homolog, mitochondrial-like.	Diablo homolog, mitochondrial-like.	0.903
LOC106603345	LOC106612804	ENSSSAP00000040200	ENSSSAP00000105620	Diablo homolog, mitochondrial-like.	Diablo homolog, mitochondrial-like.	0.903
LOC106603345	fdft1	ENSSSAP00000040200	ENSSSAP00000016381	Diablo homolog, mitochondrial-like.	Squalene synthase isoform X1.	0.403
LOC106603345	slc27a2	ENSSSAP00000040200	ENSSSAP00000043000	Diablo homolog, mitochondrial-like.	Very long-chain acyl-CoA synthetase.	0.567
LOC106609962	slc27a2	ENSSSAP00000033528	ENSSSAP00000043000	Plasma protease C1 inhibitor-like; Belongs to the serpin family.	Very long-chain acyl-CoA synthetase.	0.408