8 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101448031	Interleukin; Belongs to the IL-15/IL-21 family. (215 aa)
	jak2	Tyrosine-protein kinase. (1180 aa)
	LOC106596454	Interleukin; Belongs to the IL-15/IL-21 family. (177 aa)
	prl	Prolactin. (190 aa)
	LOC100136580	Prolactin isoform X1. (220 aa)
	LOC106580769	Interleukin; Belongs to the IL-15/IL-21 family. (153 aa)
	LOC106610234	Interleukin; Belongs to the IL-15/IL-21 family. (227 aa)
	LOC106604777	Toll-like receptor 6. (837 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136580	jak2	ENSSSAP00000063821	ENSSSAP00000020319	Prolactin isoform X1.	Tyrosine-protein kinase.	0.528
LOC106580769	jak2	ENSSSAP00000091777	ENSSSAP00000020319	Interleukin; Belongs to the IL-15/IL-21 family.	Tyrosine-protein kinase.	0.408
jak2	LOC100136580	ENSSSAP00000020319	ENSSSAP00000063821	Tyrosine-protein kinase.	Prolactin isoform X1.	0.528
jak2	LOC106580769	ENSSSAP00000020319	ENSSSAP00000091777	Tyrosine-protein kinase.	Interleukin; Belongs to the IL-15/IL-21 family.	0.408
jak2	prl	ENSSSAP00000020319	ENSSSAP00000026989	Tyrosine-protein kinase.	Prolactin.	0.528
prl	jak2	ENSSSAP00000026989	ENSSSAP00000020319	Prolactin.	Tyrosine-protein kinase.	0.528