13 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHO	Rhodopsin. (354 aa)
	LOC106599551	Period circadian protein homolog 2-like isoform X1. (1486 aa)
	ptn	Pleiotrophin isoform X1. (236 aa)
	LOC106609498	Pleiotrophin-like. (162 aa)
	rho	Rhodopsin. (343 aa)
	LOC101448024	melanopsin-B. (465 aa)
	LOC106583538	Rhodopsin. (347 aa)
	opn4m1a1	Long melanopsin isoform X1. (577 aa)
	opn4x1a	Melanopsin; Belongs to the G-protein coupled receptor 1 family. (610 aa)
	LOC106604747	Pinopsin-like. (462 aa)
	per2	Period circadian protein homolog 2. (1345 aa)
	LOC106583133	LOW QUALITY PROTEIN: period circadian protein homolog 3-like. (1250 aa)
	LOC100136370	Rhodopsin. (354 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136370	LOC106583538	ENSSSAP00000111426	ENSSSAP00000059830	Rhodopsin.	Rhodopsin.	0.911
LOC100136370	RHO	ENSSSAP00000111426	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.916
LOC101448024	LOC106583133	ENSSSAP00000056946	ENSSSAP00000109515	melanopsin-B.	LOW QUALITY PROTEIN: period circadian protein homolog 3-like.	0.433
LOC101448024	LOC106583538	ENSSSAP00000056946	ENSSSAP00000059830	melanopsin-B.	Rhodopsin.	0.407
LOC101448024	LOC106609498	ENSSSAP00000056946	ENSSSAP00000019863	melanopsin-B.	Pleiotrophin-like.	0.451
LOC106583133	LOC101448024	ENSSSAP00000109515	ENSSSAP00000056946	LOW QUALITY PROTEIN: period circadian protein homolog 3-like.	melanopsin-B.	0.433
LOC106583133	LOC106604747	ENSSSAP00000109515	ENSSSAP00000107004	LOW QUALITY PROTEIN: period circadian protein homolog 3-like.	Pinopsin-like.	0.413
LOC106583133	opn4m1a1	ENSSSAP00000109515	ENSSSAP00000082565	LOW QUALITY PROTEIN: period circadian protein homolog 3-like.	Long melanopsin isoform X1.	0.433
LOC106583538	LOC100136370	ENSSSAP00000059830	ENSSSAP00000111426	Rhodopsin.	Rhodopsin.	0.911
LOC106583538	LOC101448024	ENSSSAP00000059830	ENSSSAP00000056946	Rhodopsin.	melanopsin-B.	0.407
LOC106583538	RHO	ENSSSAP00000059830	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.914
LOC106583538	opn4m1a1	ENSSSAP00000059830	ENSSSAP00000082565	Rhodopsin.	Long melanopsin isoform X1.	0.410
LOC106583538	opn4x1a	ENSSSAP00000059830	ENSSSAP00000103073	Rhodopsin.	Melanopsin; Belongs to the G-protein coupled receptor 1 family.	0.412
LOC106604747	LOC106583133	ENSSSAP00000107004	ENSSSAP00000109515	Pinopsin-like.	LOW QUALITY PROTEIN: period circadian protein homolog 3-like.	0.413
LOC106604747	LOC106609498	ENSSSAP00000107004	ENSSSAP00000019863	Pinopsin-like.	Pleiotrophin-like.	0.541
LOC106604747	ptn	ENSSSAP00000107004	ENSSSAP00000017463	Pinopsin-like.	Pleiotrophin isoform X1.	0.455
LOC106609498	LOC101448024	ENSSSAP00000019863	ENSSSAP00000056946	Pleiotrophin-like.	melanopsin-B.	0.451
LOC106609498	LOC106604747	ENSSSAP00000019863	ENSSSAP00000107004	Pleiotrophin-like.	Pinopsin-like.	0.541
LOC106609498	opn4m1a1	ENSSSAP00000019863	ENSSSAP00000082565	Pleiotrophin-like.	Long melanopsin isoform X1.	0.452
RHO	LOC100136370	ENSSSAP00000013279	ENSSSAP00000111426	Rhodopsin.	Rhodopsin.	0.916