57 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	LOC106590795	Transforming growth factor beta; Belongs to the TGF-beta family. (409 aa)
	spic	Transcription factor Spi-C. (236 aa)
	PDGFRB	Platelet-derived growth factor receptor beta; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1109 aa)
	LOC106611876	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1094 aa)
	pfn2	Profilin; Belongs to the profilin family. (139 aa)
	RHO	Rhodopsin. (354 aa)
	LOC106575069	Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	vcam1	Vascular cell adhesion protein 1. (828 aa)
	LOC106589988	Cofilin-2-like; Belongs to the actin-binding proteins ADF family. (164 aa)
	LOC106563505	Cofilin-2-like; Belongs to the actin-binding proteins ADF family. (167 aa)
	LOC106611761	Cofilin-2-like; Belongs to the actin-binding proteins ADF family. (167 aa)
	LOC100136509	Tumor necrosis factor alpha. (244 aa)
	PROF2	Profilin; Belongs to the profilin family. (97 aa)
	LOC106560322	Gelsolin-like. (797 aa)
	PDGFRB-2	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1096 aa)
	rho	Rhodopsin. (343 aa)
	LOC106576270	Transcription factor Spi-C-like isoform X2. (360 aa)
	LOC106588537	C-C chemokine receptor type 7-like; Belongs to the G-protein coupled receptor 1 family. (381 aa)
	LOC106608297	Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
	PFN3	Profilin; Belongs to the profilin family. (126 aa)
	LOC106570581	Interleukin-6 isoform A. (222 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	LOC106588840	Cytochrome c iso-1/iso-2-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	LOC106604392	Transforming growth factor beta; Belongs to the TGF-beta family. (433 aa)
	LOC100136479	CD83 antigen isoform X2. (229 aa)
	LOC106612106	Transforming growth factor beta; Belongs to the TGF-beta family. (425 aa)
	IL-10	Interleukin-10-like. (123 aa)
	LOC106565430	Gelsolin-like. (763 aa)
	cd40l	CD40 ligand; Belongs to the tumor necrosis factor family. (264 aa)
	LOC106567123	Tumor necrosis factor receptor superfamily member 5-like. (317 aa)
	LOC106605021	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	ptprc	Receptor-type tyrosine-protein phosphatase C isoform X1. (1412 aa)
	LOC100136512	Interleukin-10. (300 aa)
	LOC106563231	Gelsolin-like isoform X2. (817 aa)
	LOC106572383	wiskott-Aldrich syndrome protein homolog. (509 aa)
	LOC106568739	Profilin; Belongs to the profilin family. (139 aa)
	LOC106584161	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106584171	Gelsolin-like. (763 aa)
	LOC106586251	Cytochrome C; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (108 aa)
	LOC106582467	Cytochrome c-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	LOC106567248	Wiskott-Aldrich syndrome protein homolog. (506 aa)
	LOC106609359	Gelsolin-like. (769 aa)
	LOC106568976	Gelsolin-like. (770 aa)
	alb1	Serum albumin 1; Serum albumin, the main protein of plasma, has a good binding capacity for water, Ca(2+), Na(+), K(+), fatty acids, hormones, bilirubin and drugs. Its main function is the regulation of the colloidal osmotic pressure of blood. (658 aa)
	LOC106588714	Adseverin-like. (775 aa)
	LOC106570315	Adseverin-like isoform X1. (776 aa)
	LOC106570911	Serum albumin 2-like. (608 aa)
	LOC106598932	Gelsolin-like. (769 aa)
	LOC106602581	Lectin-like. (246 aa)
	ccr6	C-C chemokine receptor type 6; Belongs to the G-protein coupled receptor 1 family. (392 aa)
	LOC106568266	Profilin; Belongs to the profilin family. (113 aa)
	LOC106602033	Cofilin-2-like; Belongs to the actin-binding proteins ADF family. (166 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	LOC100136370	Rhodopsin. (354 aa)
	BCL2	Apoptosis regulator Bcl-2-like. (230 aa)
	LOC106613487	Profilin; Belongs to the profilin family. (139 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2	LOC106575069	ENSSSAP00000114628	ENSSSAP00000014854	Apoptosis regulator Bcl-2-like.	Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.788
BCL2	LOC106582467	ENSSSAP00000114628	ENSSSAP00000090105	Apoptosis regulator Bcl-2-like.	Cytochrome c-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.791
BCL2	LOC106586251	ENSSSAP00000114628	ENSSSAP00000088723	Apoptosis regulator Bcl-2-like.	Cytochrome C; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.791
BCL2	LOC106588840	ENSSSAP00000114628	ENSSSAP00000054138	Apoptosis regulator Bcl-2-like.	Cytochrome c iso-1/iso-2-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.788
IL-10	LOC100136479	ENSSSAP00000068333	ENSSSAP00000063006	Interleukin-10-like.	CD83 antigen isoform X2.	0.569
IL-10	LOC100136509	ENSSSAP00000068333	ENSSSAP00000041208	Interleukin-10-like.	Tumor necrosis factor alpha.	0.625
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
IL-10	LOC100136559	ENSSSAP00000068333	ENSSSAP00000004983	Interleukin-10-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.627
IL-10	LOC106563563	ENSSSAP00000068333	ENSSSAP00000109831	Interleukin-10-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.627
IL-10	LOC106567123	ENSSSAP00000068333	ENSSSAP00000074720	Interleukin-10-like.	Tumor necrosis factor receptor superfamily member 5-like.	0.560
IL-10	LOC106570581	ENSSSAP00000068333	ENSSSAP00000053478	Interleukin-10-like.	Interleukin-6 isoform A.	0.627
IL-10	LOC106570911	ENSSSAP00000068333	ENSSSAP00000099721	Interleukin-10-like.	Serum albumin 2-like.	0.441
IL-10	LOC106613337	ENSSSAP00000068333	ENSSSAP00000053777	Interleukin-10-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.628
IL-10	alb1	ENSSSAP00000068333	ENSSSAP00000093436	Interleukin-10-like.	Serum albumin 1; Serum albumin, the main protein of plasma, has a good binding capacity for water, Ca(2+), Na(+), K(+), fatty acids, hormones, bilirubin and drugs. Its main function is the regulation of the colloidal osmotic pressure of blood.	0.441
IL-10	cd40l	ENSSSAP00000068333	ENSSSAP00000070829	Interleukin-10-like.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.632
IL-10	ptprc	ENSSSAP00000068333	ENSSSAP00000079402	Interleukin-10-like.	Receptor-type tyrosine-protein phosphatase C isoform X1.	0.510
IL-10	vcam1	ENSSSAP00000068333	ENSSSAP00000016867	Interleukin-10-like.	Vascular cell adhesion protein 1.	0.412
LOC100136370	RHO	ENSSSAP00000111426	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.916
LOC100136479	IL-10	ENSSSAP00000063006	ENSSSAP00000068333	CD83 antigen isoform X2.	Interleukin-10-like.	0.569
LOC100136479	LOC100136512	ENSSSAP00000063006	ENSSSAP00000080196	CD83 antigen isoform X2.	Interleukin-10.	0.569