14 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106609976	Ras-related C3 botulinum toxin substrate 1. (243 aa)
	LOC106576553	Cell division control protein 42 homolog. (191 aa)
	LOC106601744	Ras-related C3 botulinum toxin substrate 1-like. (192 aa)
	RHO	Rhodopsin. (354 aa)
	LOC106567263	Cell division control protein 42 homolog isoform X2. (191 aa)
	LOC106601744-2	Ras-related C3 botulinum toxin substrate 1-like. (193 aa)
	rho	Rhodopsin. (343 aa)
	rac1	Ras-related C3 Botulinum toxin substrate 1. (192 aa)
	LOC106565619	Cell division control protein 42 homolog isoform X1. (191 aa)
	LOC106576553-2	Cell division control protein 42 homolog. (269 aa)
	LOC106572399	Cell division control protein 42 homolog isoform X1. (191 aa)
	LOC106569986	Cell division control protein 42 homolog. (191 aa)
	LOC106583122	Cell division control protein 42 homolog isoform X1. (191 aa)
	LOC100136370	Rhodopsin. (354 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136370	LOC106565619	ENSSSAP00000111426	ENSSSAP00000065127	Rhodopsin.	Cell division control protein 42 homolog isoform X1.	0.622
LOC100136370	LOC106567263	ENSSSAP00000111426	ENSSSAP00000029425	Rhodopsin.	Cell division control protein 42 homolog isoform X2.	0.622
LOC100136370	LOC106569986	ENSSSAP00000111426	ENSSSAP00000099267	Rhodopsin.	Cell division control protein 42 homolog.	0.576
LOC100136370	LOC106572399	ENSSSAP00000111426	ENSSSAP00000071256	Rhodopsin.	Cell division control protein 42 homolog isoform X1.	0.622
LOC100136370	LOC106576553	ENSSSAP00000111426	ENSSSAP00000006793	Rhodopsin.	Cell division control protein 42 homolog.	0.576
LOC100136370	LOC106576553-2	ENSSSAP00000111426	ENSSSAP00000068402	Rhodopsin.	Cell division control protein 42 homolog.	0.576
LOC100136370	LOC106583122	ENSSSAP00000111426	ENSSSAP00000109877	Rhodopsin.	Cell division control protein 42 homolog isoform X1.	0.622
LOC100136370	LOC106601744	ENSSSAP00000111426	ENSSSAP00000010307	Rhodopsin.	Ras-related C3 botulinum toxin substrate 1-like.	0.558
LOC100136370	LOC106601744-2	ENSSSAP00000111426	ENSSSAP00000037250	Rhodopsin.	Ras-related C3 botulinum toxin substrate 1-like.	0.603
LOC100136370	LOC106609976	ENSSSAP00000111426	ENSSSAP00000002059	Rhodopsin.	Ras-related C3 botulinum toxin substrate 1.	0.558
LOC100136370	RHO	ENSSSAP00000111426	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.916
LOC100136370	rac1	ENSSSAP00000111426	ENSSSAP00000063887	Rhodopsin.	Ras-related C3 Botulinum toxin substrate 1.	0.558
LOC106565619	LOC100136370	ENSSSAP00000065127	ENSSSAP00000111426	Cell division control protein 42 homolog isoform X1.	Rhodopsin.	0.622
LOC106565619	LOC106601744	ENSSSAP00000065127	ENSSSAP00000010307	Cell division control protein 42 homolog isoform X1.	Ras-related C3 botulinum toxin substrate 1-like.	0.600
LOC106565619	LOC106601744-2	ENSSSAP00000065127	ENSSSAP00000037250	Cell division control protein 42 homolog isoform X1.	Ras-related C3 botulinum toxin substrate 1-like.	0.601
LOC106565619	LOC106609976	ENSSSAP00000065127	ENSSSAP00000002059	Cell division control protein 42 homolog isoform X1.	Ras-related C3 botulinum toxin substrate 1.	0.602
LOC106565619	RHO	ENSSSAP00000065127	ENSSSAP00000013279	Cell division control protein 42 homolog isoform X1.	Rhodopsin.	0.622
LOC106565619	rac1	ENSSSAP00000065127	ENSSSAP00000063887	Cell division control protein 42 homolog isoform X1.	Ras-related C3 Botulinum toxin substrate 1.	0.600
LOC106565619	rho	ENSSSAP00000065127	ENSSSAP00000045561	Cell division control protein 42 homolog isoform X1.	Rhodopsin.	0.514
LOC106567263	LOC100136370	ENSSSAP00000029425	ENSSSAP00000111426	Cell division control protein 42 homolog isoform X2.	Rhodopsin.	0.622