19 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106602970	Sjoegren syndrome/scleroderma autoantigen 1 homolog. (232 aa)
	opn4x1b2	Melanopsin. (369 aa)
	gdnf	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (265 aa)
	LOC106576598	plexin-B2-like. (1859 aa)
	LOC106584474	plexin-B2-like. (1862 aa)
	tbck	TBC domain-containing protein kinase-like protein isoform X2. (891 aa)
	LOC106582389	NEDD8-conjugating enzyme UBE2F-like; Belongs to the ubiquitin-conjugating enzyme family. (191 aa)
	LOC106585358	Transient receptor potential cation channel subfamily M member 3-like isoform X6. (1764 aa)
	LOC106560979	plexin-B2-like. (1864 aa)
	ACSL4	long-chain-fatty-acid--CoA ligase 4-like isoform X1. (739 aa)
	ssa27	Sjoegren syndrome/scleroderma autoantigen 1 homolog. (232 aa)
	LOC106579103	Supervillin-like isoform X2. (1512 aa)
	LOC106585358-2	Transient receptor potential cation channel subfamily M member 3-like. (1764 aa)
	CODA1	Collagen alpha-1XIII chain. (673 aa)
	pin4	long-chain-fatty-acid--CoA ligase 4-like. (716 aa)
	brd2	Bromodomain containing 2 isoform X7. (816 aa)
	LOC106580056	Transient receptor potential cation channel subfamily M member 3-like isoform X5. (1770 aa)
	LOC106578556	Supervillin-like isoform X4. (2541 aa)
	LOC106600477	Supervillin-like isoform X5. (2722 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSL4	pin4	ENSSSAP00000067162	ENSSSAP00000106150	long-chain-fatty-acid--CoA ligase 4-like isoform X1.	long-chain-fatty-acid--CoA ligase 4-like.	0.604
CODA1	LOC106580056	ENSSSAP00000099373	ENSSSAP00000113448	Collagen alpha-1XIII chain.	Transient receptor potential cation channel subfamily M member 3-like isoform X5.	0.628
CODA1	LOC106582389	ENSSSAP00000099373	ENSSSAP00000056129	Collagen alpha-1XIII chain.	NEDD8-conjugating enzyme UBE2F-like; Belongs to the ubiquitin-conjugating enzyme family.	0.655
CODA1	LOC106585358	ENSSSAP00000099373	ENSSSAP00000056969	Collagen alpha-1XIII chain.	Transient receptor potential cation channel subfamily M member 3-like isoform X6.	0.628
CODA1	LOC106585358-2	ENSSSAP00000099373	ENSSSAP00000097523	Collagen alpha-1XIII chain.	Transient receptor potential cation channel subfamily M member 3-like.	0.628
LOC106560979	LOC106578556	ENSSSAP00000057894	ENSSSAP00000118799	plexin-B2-like.	Supervillin-like isoform X4.	0.627
LOC106560979	LOC106579103	ENSSSAP00000057894	ENSSSAP00000085604	plexin-B2-like.	Supervillin-like isoform X2.	0.620
LOC106560979	LOC106580056	ENSSSAP00000057894	ENSSSAP00000113448	plexin-B2-like.	Transient receptor potential cation channel subfamily M member 3-like isoform X5.	0.604
LOC106560979	LOC106582389	ENSSSAP00000057894	ENSSSAP00000056129	plexin-B2-like.	NEDD8-conjugating enzyme UBE2F-like; Belongs to the ubiquitin-conjugating enzyme family.	0.550
LOC106560979	LOC106585358	ENSSSAP00000057894	ENSSSAP00000056969	plexin-B2-like.	Transient receptor potential cation channel subfamily M member 3-like isoform X6.	0.604
LOC106560979	LOC106585358-2	ENSSSAP00000057894	ENSSSAP00000097523	plexin-B2-like.	Transient receptor potential cation channel subfamily M member 3-like.	0.604
LOC106560979	LOC106600477	ENSSSAP00000057894	ENSSSAP00000120537	plexin-B2-like.	Supervillin-like isoform X5.	0.627
LOC106560979	LOC106602970	ENSSSAP00000057894	ENSSSAP00000092247	plexin-B2-like.	Sjoegren syndrome/scleroderma autoantigen 1 homolog.	0.410
LOC106560979	gdnf	ENSSSAP00000057894	ENSSSAP00000004251	plexin-B2-like.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.493
LOC106560979	opn4x1b2	ENSSSAP00000057894	ENSSSAP00000004240	plexin-B2-like.	Melanopsin.	0.630
LOC106560979	ssa27	ENSSSAP00000057894	ENSSSAP00000070722	plexin-B2-like.	Sjoegren syndrome/scleroderma autoantigen 1 homolog.	0.410
LOC106560979	tbck	ENSSSAP00000057894	ENSSSAP00000052436	plexin-B2-like.	TBC domain-containing protein kinase-like protein isoform X2.	0.580
LOC106576598	LOC106578556	ENSSSAP00000016580	ENSSSAP00000118799	plexin-B2-like.	Supervillin-like isoform X4.	0.627
LOC106576598	LOC106579103	ENSSSAP00000016580	ENSSSAP00000085604	plexin-B2-like.	Supervillin-like isoform X2.	0.620
LOC106576598	LOC106580056	ENSSSAP00000016580	ENSSSAP00000113448	plexin-B2-like.	Transient receptor potential cation channel subfamily M member 3-like isoform X5.	0.604