25 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106586700	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
	mx2	Myxovirus resistance 2 isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (641 aa)
	LOC100136525	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (463 aa)
	LOC106576970	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (495 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	LOC100136352	Actin-1. (410 aa)
	LOC106590795	Transforming growth factor beta; Belongs to the TGF-beta family. (409 aa)
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	LOC106564005	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
	LOC106590165	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (458 aa)
	eif3ea	Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (445 aa)
	LOC106608297	Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	ENSSSAP00000054194	Serum amyloid A. (122 aa)
	LOC106604392	Transforming growth factor beta; Belongs to the TGF-beta family. (433 aa)
	LOC106612106	Transforming growth factor beta; Belongs to the TGF-beta family. (425 aa)
	IL-10	Interleukin-10-like. (123 aa)
	ef1a	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (495 aa)
	LOC106605021	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106565911	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (241 aa)
	LOC100136512	Interleukin-10. (300 aa)
	LOC106584161	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	mmp9	Matrix metalloproteinase-9 precursor. (698 aa)
	MRT4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (313 aa)
	il4/13a	Interleukin 4/13A precursor. (142 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000054194	IL-10	ENSSSAP00000054194	ENSSSAP00000068333	Serum amyloid A.	Interleukin-10-like.	0.410
ENSSSAP00000054194	LOC100136512	ENSSSAP00000054194	ENSSSAP00000080196	Serum amyloid A.	Interleukin-10.	0.410
IL-10	ENSSSAP00000054194	ENSSSAP00000068333	ENSSSAP00000054194	Interleukin-10-like.	Serum amyloid A.	0.410
IL-10	LOC100136352	ENSSSAP00000068333	ENSSSAP00000003534	Interleukin-10-like.	Actin-1.	0.565
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
IL-10	LOC100136559	ENSSSAP00000068333	ENSSSAP00000004983	Interleukin-10-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.627
IL-10	LOC106563563	ENSSSAP00000068333	ENSSSAP00000109831	Interleukin-10-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.627
IL-10	LOC106564005	ENSSSAP00000068333	ENSSSAP00000016461	Interleukin-10-like.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.565
IL-10	LOC106576970	ENSSSAP00000068333	ENSSSAP00000110038	Interleukin-10-like.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.449
IL-10	LOC106586700	ENSSSAP00000068333	ENSSSAP00000108557	Interleukin-10-like.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.449
IL-10	LOC106613337	ENSSSAP00000068333	ENSSSAP00000053777	Interleukin-10-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.628
IL-10	il4/13a	ENSSSAP00000068333	ENSSSAP00000102212	Interleukin-10-like.	Interleukin 4/13A precursor.	0.606
IL-10	mmp9	ENSSSAP00000068333	ENSSSAP00000088286	Interleukin-10-like.	Matrix metalloproteinase-9 precursor.	0.650
IL-10	mx2	ENSSSAP00000068333	ENSSSAP00000109246	Interleukin-10-like.	Myxovirus resistance 2 isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.436
LOC100136352	IL-10	ENSSSAP00000003534	ENSSSAP00000068333	Actin-1.	Interleukin-10-like.	0.565
LOC100136352	LOC100136512	ENSSSAP00000003534	ENSSSAP00000080196	Actin-1.	Interleukin-10.	0.565
LOC100136352	LOC100136525	ENSSSAP00000003534	ENSSSAP00000112728	Actin-1.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.831
LOC100136352	LOC106576970	ENSSSAP00000003534	ENSSSAP00000110038	Actin-1.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.770
LOC100136352	LOC106586700	ENSSSAP00000003534	ENSSSAP00000108557	Actin-1.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.770
LOC100136352	LOC106590165	ENSSSAP00000003534	ENSSSAP00000021012	Actin-1.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.770