10 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106588135	Chymotrypsin A-like; Belongs to the peptidase S1 family. (263 aa)
	ef2	Elongation factor 2. (880 aa)
	LOC106568020	Phosphoglycerate kinase. (766 aa)
	LOC106576578	Chymotrypsin B precursor; Belongs to the peptidase S1 family. (304 aa)
	LOC106613766	Elongation factor 2-like isoform X1. (875 aa)
	ctrl	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family. (656 aa)
	LOC106569524	Elongation factor 2-like. (881 aa)
	LOC106591457	Chymotrypsin A-like; Belongs to the peptidase S1 family. (263 aa)
	pgk	Phosphoglycerate kinase. (417 aa)
	LOC106600009	Elongation factor 2-like. (868 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106568020	LOC106569524	ENSSSAP00000022946	ENSSSAP00000115384	Phosphoglycerate kinase.	Elongation factor 2-like.	0.720
LOC106568020	LOC106600009	ENSSSAP00000022946	ENSSSAP00000118594	Phosphoglycerate kinase.	Elongation factor 2-like.	0.720
LOC106568020	LOC106613766	ENSSSAP00000022946	ENSSSAP00000005375	Phosphoglycerate kinase.	Elongation factor 2-like isoform X1.	0.720
LOC106568020	ctrl	ENSSSAP00000022946	ENSSSAP00000004478	Phosphoglycerate kinase.	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	0.418
LOC106568020	ef2	ENSSSAP00000022946	ENSSSAP00000024296	Phosphoglycerate kinase.	Elongation factor 2.	0.720
LOC106569524	LOC106568020	ENSSSAP00000115384	ENSSSAP00000022946	Elongation factor 2-like.	Phosphoglycerate kinase.	0.720
LOC106569524	ctrl	ENSSSAP00000115384	ENSSSAP00000004478	Elongation factor 2-like.	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	0.475
LOC106569524	pgk	ENSSSAP00000115384	ENSSSAP00000069128	Elongation factor 2-like.	Phosphoglycerate kinase.	0.720
LOC106576578	ctrl	ENSSSAP00000013079	ENSSSAP00000004478	Chymotrypsin B precursor; Belongs to the peptidase S1 family.	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	0.476
LOC106600009	LOC106568020	ENSSSAP00000118594	ENSSSAP00000022946	Elongation factor 2-like.	Phosphoglycerate kinase.	0.720
LOC106600009	ctrl	ENSSSAP00000118594	ENSSSAP00000004478	Elongation factor 2-like.	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	0.475
LOC106600009	pgk	ENSSSAP00000118594	ENSSSAP00000069128	Elongation factor 2-like.	Phosphoglycerate kinase.	0.720
LOC106613766	LOC106568020	ENSSSAP00000005375	ENSSSAP00000022946	Elongation factor 2-like isoform X1.	Phosphoglycerate kinase.	0.720
LOC106613766	ctrl	ENSSSAP00000005375	ENSSSAP00000004478	Elongation factor 2-like isoform X1.	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	0.475
LOC106613766	pgk	ENSSSAP00000005375	ENSSSAP00000069128	Elongation factor 2-like isoform X1.	Phosphoglycerate kinase.	0.720
ctrl	LOC106568020	ENSSSAP00000004478	ENSSSAP00000022946	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	Phosphoglycerate kinase.	0.418
ctrl	LOC106569524	ENSSSAP00000004478	ENSSSAP00000115384	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	Elongation factor 2-like.	0.475
ctrl	LOC106576578	ENSSSAP00000004478	ENSSSAP00000013079	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	Chymotrypsin B precursor; Belongs to the peptidase S1 family.	0.476
ctrl	LOC106600009	ENSSSAP00000004478	ENSSSAP00000118594	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	Elongation factor 2-like.	0.475
ctrl	LOC106613766	ENSSSAP00000004478	ENSSSAP00000005375	Heat shock protein 70 isoform 3; Belongs to the heat shock protein 70 family.	Elongation factor 2-like isoform X1.	0.475