14 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106574396	Toll-like receptor 13. (931 aa)
	il17d	interleukin-17D isoform X1. (206 aa)
	gata3	Transcription factor GATA-3 isoform X1. (441 aa)
	LOC100136512	Interleukin-10. (300 aa)
	LOC106576211	Transcription factor GATA-3-like isoform X1. (455 aa)
	LOC106568779	LOW QUALITY PROTEIN: transferrin receptor protein 1-like. (407 aa)
	LOC106587252	Haptoglobin-like. (316 aa)
	LOC106579454	Transferrin receptor protein 1-like isoform X1. (760 aa)
	gata1	GATA-binding factor 1. (424 aa)
	LOC106598822-2	Haptoglobin-like isoform X2. (303 aa)
	LOC106563307	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (334 aa)
	LOC106597167	Transferrin receptor protein 1-like. (776 aa)
	LOC106581595	Haptoglobin-like. (316 aa)
	IL-10	Interleukin-10-like. (123 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
IL-10	LOC106574396	ENSSSAP00000068333	ENSSSAP00000079110	Interleukin-10-like.	Toll-like receptor 13.	0.464
IL-10	LOC106576211	ENSSSAP00000068333	ENSSSAP00000107990	Interleukin-10-like.	Transcription factor GATA-3-like isoform X1.	0.703
IL-10	gata1	ENSSSAP00000068333	ENSSSAP00000017901	Interleukin-10-like.	GATA-binding factor 1.	0.588
IL-10	gata3	ENSSSAP00000068333	ENSSSAP00000075259	Interleukin-10-like.	Transcription factor GATA-3 isoform X1.	0.847
IL-10	il17d	ENSSSAP00000068333	ENSSSAP00000069585	Interleukin-10-like.	interleukin-17D isoform X1.	0.555
LOC100136512	IL-10	ENSSSAP00000080196	ENSSSAP00000068333	Interleukin-10.	Interleukin-10-like.	0.900
LOC100136512	LOC106574396	ENSSSAP00000080196	ENSSSAP00000079110	Interleukin-10.	Toll-like receptor 13.	0.464
LOC100136512	LOC106576211	ENSSSAP00000080196	ENSSSAP00000107990	Interleukin-10.	Transcription factor GATA-3-like isoform X1.	0.703
LOC100136512	gata1	ENSSSAP00000080196	ENSSSAP00000017901	Interleukin-10.	GATA-binding factor 1.	0.588
LOC100136512	gata3	ENSSSAP00000080196	ENSSSAP00000075259	Interleukin-10.	Transcription factor GATA-3 isoform X1.	0.704
LOC100136512	il17d	ENSSSAP00000080196	ENSSSAP00000069585	Interleukin-10.	interleukin-17D isoform X1.	0.555
LOC106563307	LOC106568779	ENSSSAP00000042423	ENSSSAP00000107038	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	LOW QUALITY PROTEIN: transferrin receptor protein 1-like.	0.499
LOC106563307	LOC106579454	ENSSSAP00000042423	ENSSSAP00000012576	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Transferrin receptor protein 1-like isoform X1.	0.499
LOC106563307	LOC106597167	ENSSSAP00000042423	ENSSSAP00000045120	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	Transferrin receptor protein 1-like.	0.499
LOC106568779	LOC106563307	ENSSSAP00000107038	ENSSSAP00000042423	LOW QUALITY PROTEIN: transferrin receptor protein 1-like.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.499
LOC106568779	LOC106579454	ENSSSAP00000107038	ENSSSAP00000012576	LOW QUALITY PROTEIN: transferrin receptor protein 1-like.	Transferrin receptor protein 1-like isoform X1.	0.901
LOC106568779	LOC106597167	ENSSSAP00000107038	ENSSSAP00000045120	LOW QUALITY PROTEIN: transferrin receptor protein 1-like.	Transferrin receptor protein 1-like.	0.905
LOC106574396	IL-10	ENSSSAP00000079110	ENSSSAP00000068333	Toll-like receptor 13.	Interleukin-10-like.	0.464
LOC106574396	LOC100136512	ENSSSAP00000079110	ENSSSAP00000080196	Toll-like receptor 13.	Interleukin-10.	0.464