34 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hip1r	Huntingtin-interacting protein 1-related protein isoform X1. (1068 aa)
	ENSSSAP00000106634	SAP30 binding protein. (258 aa)
	NR3C1	Glucocorticoid receptor-like isoform X2. (806 aa)
	LOC100136352	Actin-1. (410 aa)
	GCF	GC-rich sequence DNA-binding factor. (566 aa)
	LOC106607598	NF-kappa-B inhibitor alpha-like. (380 aa)
	RHO	Rhodopsin. (354 aa)
	pxdn	Peroxidasin homolog isoform X1. (1489 aa)
	LOC106564005	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
	LOC106570380	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (661 aa)
	Fau	Small subunit ribosomal protein S30e. (62 aa)
	LOC106571222	NF-kappa-B inhibitor alpha-like. (314 aa)
	LOC106580111	Disintegrin and metalloproteinase domain-containing protein 15-like isoform X1. (988 aa)
	rho	Rhodopsin. (343 aa)
	LOC106611175	NF-kappa-B inhibitor alpha-like. (320 aa)
	LOC106579390	Nucleotide-binding oligomerization domain-containing protein 1-like. (960 aa)
	LOC106587297	Myosin light chain kinase 3-like isoform X1. (829 aa)
	MPRIP	Uncharacterized protein LOC106579185 isoform X1. (2531 aa)
	LOC106604224	Glucocorticoid receptor-like isoform X1. (665 aa)
	arhgap32	Rho GTPase-activating protein 32 isoform X1. (1986 aa)
	LOC106601178	NF-kappa-B inhibitor alpha-like. (334 aa)
	LOC106605511	Nucleotide-binding oligomerization domain-containing protein 1-like. (954 aa)
	LOC106562001	Myosin light chain kinase 3-like isoform X1. (845 aa)
	sdha	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (661 aa)
	rbl1	Retinoblastoma-like protein 1 isoform X1. (1057 aa)
	fau	annotation not available (146 aa)
	LOC106589502	Protein outspread-like isoform X1. (2033 aa)
	LOC106572928	Peroxidasin-like. (1491 aa)
	alb1	Serum albumin 1; Serum albumin, the main protein of plasma, has a good binding capacity for water, Ca(2+), Na(+), K(+), fatty acids, hormones, bilirubin and drugs. Its main function is the regulation of the colloidal osmotic pressure of blood. (658 aa)
	LOC106570911	Serum albumin 2-like. (608 aa)
	LOC106605439	Disintegrin and metalloproteinase domain-containing protein 15-like isoform X7. (997 aa)
	LOC106578848	Myosin phosphatase Rho-interacting protein-like isoform X1. (1994 aa)
	NR3C1-2	Glucocorticoid receptor isoform X2. (771 aa)
	LOC100136370	Rhodopsin. (354 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000106634	Fau	ENSSSAP00000106634	ENSSSAP00000026673	SAP30 binding protein.	Small subunit ribosomal protein S30e.	0.570
ENSSSAP00000106634	LOC106580111	ENSSSAP00000106634	ENSSSAP00000042343	SAP30 binding protein.	Disintegrin and metalloproteinase domain-containing protein 15-like isoform X1.	0.609
ENSSSAP00000106634	LOC106605439	ENSSSAP00000106634	ENSSSAP00000102217	SAP30 binding protein.	Disintegrin and metalloproteinase domain-containing protein 15-like isoform X7.	0.609
ENSSSAP00000106634	fau	ENSSSAP00000106634	ENSSSAP00000079872	SAP30 binding protein.	annotation not available	0.570
ENSSSAP00000106634	hip1r	ENSSSAP00000106634	ENSSSAP00000109227	SAP30 binding protein.	Huntingtin-interacting protein 1-related protein isoform X1.	0.678
ENSSSAP00000106634	rbl1	ENSSSAP00000106634	ENSSSAP00000078887	SAP30 binding protein.	Retinoblastoma-like protein 1 isoform X1.	0.700
Fau	ENSSSAP00000106634	ENSSSAP00000026673	ENSSSAP00000106634	Small subunit ribosomal protein S30e.	SAP30 binding protein.	0.570
Fau	LOC100136352	ENSSSAP00000026673	ENSSSAP00000003534	Small subunit ribosomal protein S30e.	Actin-1.	0.421
Fau	LOC106562001	ENSSSAP00000026673	ENSSSAP00000075814	Small subunit ribosomal protein S30e.	Myosin light chain kinase 3-like isoform X1.	0.440
Fau	LOC106564005	ENSSSAP00000026673	ENSSSAP00000016461	Small subunit ribosomal protein S30e.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.421
Fau	LOC106587297	ENSSSAP00000026673	ENSSSAP00000065504	Small subunit ribosomal protein S30e.	Myosin light chain kinase 3-like isoform X1.	0.440
Fau	fau	ENSSSAP00000026673	ENSSSAP00000079872	Small subunit ribosomal protein S30e.	annotation not available	0.962
Fau	hip1r	ENSSSAP00000026673	ENSSSAP00000109227	Small subunit ribosomal protein S30e.	Huntingtin-interacting protein 1-related protein isoform X1.	0.454
Fau	rbl1	ENSSSAP00000026673	ENSSSAP00000078887	Small subunit ribosomal protein S30e.	Retinoblastoma-like protein 1 isoform X1.	0.635
LOC100136352	Fau	ENSSSAP00000003534	ENSSSAP00000026673	Actin-1.	Small subunit ribosomal protein S30e.	0.421
LOC100136352	LOC106570380	ENSSSAP00000003534	ENSSSAP00000025333	Actin-1.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.438
LOC100136352	LOC106570911	ENSSSAP00000003534	ENSSSAP00000099721	Actin-1.	Serum albumin 2-like.	0.545
LOC100136352	LOC106572928	ENSSSAP00000003534	ENSSSAP00000091330	Actin-1.	Peroxidasin-like.	0.584
LOC100136352	alb1	ENSSSAP00000003534	ENSSSAP00000093436	Actin-1.	Serum albumin 1; Serum albumin, the main protein of plasma, has a good binding capacity for water, Ca(2+), Na(+), K(+), fatty acids, hormones, bilirubin and drugs. Its main function is the regulation of the colloidal osmotic pressure of blood.	0.546
LOC100136352	fau	ENSSSAP00000003534	ENSSSAP00000079872	Actin-1.	annotation not available	0.421