21 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106590170	Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (400 aa)
	arg2	Arginase 2. (363 aa)
	LOC100136352	Actin-1. (410 aa)
	RHO	Rhodopsin. (354 aa)
	ENSSSAP00000014414	Dual specificity phosphatase 5. (347 aa)
	LOC106564005	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
	LOC100195685	Serine/threonine-protein kinase SIK2. (808 aa)
	LOC106567334	Probable nuclear hormone receptor HR38 isoform X1. (587 aa)
	LOC106572532	Nuclear receptor subfamily 4 group A member 1-like. (607 aa)
	rho	Rhodopsin. (343 aa)
	NR4A1	Probable nuclear hormone receptor HR38. (589 aa)
	IL-10	Interleukin-10-like. (123 aa)
	LOC106604454	Glycine receptor subunit alpha-4-like isoform X2; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (501 aa)
	LOC100136512	Interleukin-10. (300 aa)
	cyp1a-2	Cytochrome P450, family 1, subfamily A; Belongs to the cytochrome P450 family. (522 aa)
	LOC106611505	Glycine receptor subunit alpha-4 isoform X1; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (455 aa)
	cyp1a	Cytochrome P450, family 1, subfamily A isoform X1; Belongs to the cytochrome P450 family. (524 aa)
	LOC106586692	Serine/threonine-protein kinase SIK2-like. (814 aa)
	LOC100136370	Rhodopsin. (354 aa)
	LOC106588393	Zinc transporter Slc39a7-like. (478 aa)
	CHRNA9	Neuronal acetylcholine receptor subunit alpha-9-II isoform X1. (579 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IL-10	LOC100136352	ENSSSAP00000068333	ENSSSAP00000003534	Interleukin-10-like.	Actin-1.	0.565
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
IL-10	LOC106564005	ENSSSAP00000068333	ENSSSAP00000016461	Interleukin-10-like.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.565
IL-10	arg2	ENSSSAP00000068333	ENSSSAP00000000121	Interleukin-10-like.	Arginase 2.	0.538
LOC100136352	IL-10	ENSSSAP00000003534	ENSSSAP00000068333	Actin-1.	Interleukin-10-like.	0.565
LOC100136352	LOC100136512	ENSSSAP00000003534	ENSSSAP00000080196	Actin-1.	Interleukin-10.	0.565
LOC100136370	RHO	ENSSSAP00000111426	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.916
LOC100136512	IL-10	ENSSSAP00000080196	ENSSSAP00000068333	Interleukin-10.	Interleukin-10-like.	0.900
LOC100136512	LOC100136352	ENSSSAP00000080196	ENSSSAP00000003534	Interleukin-10.	Actin-1.	0.565
LOC100136512	LOC106564005	ENSSSAP00000080196	ENSSSAP00000016461	Interleukin-10.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.565
LOC100136512	arg2	ENSSSAP00000080196	ENSSSAP00000000121	Interleukin-10.	Arginase 2.	0.538
LOC106564005	IL-10	ENSSSAP00000016461	ENSSSAP00000068333	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Interleukin-10-like.	0.565
LOC106564005	LOC100136512	ENSSSAP00000016461	ENSSSAP00000080196	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Interleukin-10.	0.565
RHO	LOC100136370	ENSSSAP00000013279	ENSSSAP00000111426	Rhodopsin.	Rhodopsin.	0.916
arg2	IL-10	ENSSSAP00000000121	ENSSSAP00000068333	Arginase 2.	Interleukin-10-like.	0.538
arg2	LOC100136512	ENSSSAP00000000121	ENSSSAP00000080196	Arginase 2.	Interleukin-10.	0.538