STRINGSTRING
LOC106591457 LOC106591457 SIX3 SIX3 opn4x1b2 opn4x1b2 LOC106613680 LOC106613680 rrh rrh CLOCK CLOCK LOC106576578 LOC106576578 otx2 otx2 PAX6 PAX6 LOC106605317 LOC106605317 PCNA PCNA six3 six3 ENSSSAP00000019392 ENSSSAP00000019392 LOC106612058 LOC106612058 ENSSSAP00000040667 ENSSSAP00000040667 LOC106604350 LOC106604350 LOC106576799 LOC106576799 LOC106588135 LOC106588135 LOC106580445 LOC106580445 LOC100136521 LOC100136521 clock clock LOC106565463 LOC106565463 LOC106573820 LOC106573820 opn4x1a opn4x1a LOC100136370 LOC100136370 LOC106583303 LOC106583303
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC106591457Chymotrypsin A-like; Belongs to the peptidase S1 family. (263 aa)
SIX3Homeobox protein SIX3-like. (294 aa)
opn4x1b2Melanopsin. (369 aa)
LOC106613680Retinal homeobox protein Rx1-like isoform X2. (323 aa)
rrhVisual pigment-like receptor peropsin; Belongs to the G-protein coupled receptor 1 family. (334 aa)
CLOCKCircadian locomoter output cycles protein kaput-like isoform X4. (888 aa)
LOC106576578Chymotrypsin B precursor; Belongs to the peptidase S1 family. (304 aa)
otx2Homeobox protein OTX2. (289 aa)
PAX6Paired box protein Pax-6-like isoform X5. (460 aa)
LOC106605317Opsin-3-like. (395 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
six3Homeobox protein SIX3. (294 aa)
ENSSSAP00000019392Proliferating cell nuclear antigen. (218 aa)
LOC106612058LON peptidase N-terminal domain and RING finger protein 1-like. (602 aa)
ENSSSAP00000040667Opsin 9. (437 aa)
LOC106604350LON peptidase N-terminal domain and RING finger protein 3-like isoform X1. (602 aa)
LOC106576799Opsin-3-like. (386 aa)
LOC106588135Chymotrypsin A-like; Belongs to the peptidase S1 family. (263 aa)
LOC106580445Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC100136521Vertebrate ancient opsin; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (388 aa)
clockCircadian locomoter output cycles protein kaput. (965 aa)
LOC106565463Nuclear receptor subfamily 1 group D member 1-like isoform X2. (565 aa)
LOC106573820Retinal homeobox protein Rx1-like. (323 aa)
opn4x1aMelanopsin; Belongs to the G-protein coupled receptor 1 family. (610 aa)
LOC100136370Rhodopsin. (354 aa)
LOC106583303Nuclear receptor subfamily 1 group D member 1-like isoform X1. (567 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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