11 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106562391	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like. (852 aa)
	il6ra	Interleukin-6 receptor subunit alpha isoform X1. (818 aa)
	pdzd2	Pro-interleukin-16; Interleukin-16 stimulates a migratory response in CD4+ lymphocytes, monocytes, and eosinophils. Primes CD4+ T-cells for IL-2 and IL-15 responsiveness. Also induces T-lymphocyte expression of interleukin 2 receptor. Ligand for CD4. (2151 aa)
	TLR-2	Toll-like receptor 13. (572 aa)
	IL-10	Interleukin-10-like. (123 aa)
	LOC106567123	Tumor necrosis factor receptor superfamily member 5-like. (317 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (269 aa)
	LOC100136512	Interleukin-10. (300 aa)
	il18	Interleukin-18. (199 aa)
	nod2	Nucleotide-binding oligomerization domain-containing protein 2 isoform X1. (1002 aa)
	cxcl12	C-X-C motif chemokine ligand 12. (99 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IL-10	LOC100136512	ENSSSAP00000068333	ENSSSAP00000080196	Interleukin-10-like.	Interleukin-10.	0.900
IL-10	LOC106562391	ENSSSAP00000068333	ENSSSAP00000040048	Interleukin-10-like.	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like.	0.416
IL-10	LOC106567123	ENSSSAP00000068333	ENSSSAP00000074720	Interleukin-10-like.	Tumor necrosis factor receptor superfamily member 5-like.	0.560
IL-10	TLR-2	ENSSSAP00000068333	ENSSSAP00000063294	Interleukin-10-like.	Toll-like receptor 13.	0.586
IL-10	il18	ENSSSAP00000068333	ENSSSAP00000084336	Interleukin-10-like.	Interleukin-18.	0.787
IL-10	il6ra	ENSSSAP00000068333	ENSSSAP00000053598	Interleukin-10-like.	Interleukin-6 receptor subunit alpha isoform X1.	0.410
IL-10	myd88	ENSSSAP00000068333	ENSSSAP00000080060	Interleukin-10-like.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.791
IL-10	nod2	ENSSSAP00000068333	ENSSSAP00000104635	Interleukin-10-like.	Nucleotide-binding oligomerization domain-containing protein 2 isoform X1.	0.416
LOC100136512	IL-10	ENSSSAP00000080196	ENSSSAP00000068333	Interleukin-10.	Interleukin-10-like.	0.900
LOC100136512	LOC106562391	ENSSSAP00000080196	ENSSSAP00000040048	Interleukin-10.	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like.	0.416
LOC100136512	LOC106567123	ENSSSAP00000080196	ENSSSAP00000074720	Interleukin-10.	Tumor necrosis factor receptor superfamily member 5-like.	0.560
LOC100136512	TLR-2	ENSSSAP00000080196	ENSSSAP00000063294	Interleukin-10.	Toll-like receptor 13.	0.586
LOC100136512	il18	ENSSSAP00000080196	ENSSSAP00000084336	Interleukin-10.	Interleukin-18.	0.787
LOC100136512	il6ra	ENSSSAP00000080196	ENSSSAP00000053598	Interleukin-10.	Interleukin-6 receptor subunit alpha isoform X1.	0.410
LOC100136512	myd88	ENSSSAP00000080196	ENSSSAP00000080060	Interleukin-10.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.787
LOC100136512	nod2	ENSSSAP00000080196	ENSSSAP00000104635	Interleukin-10.	Nucleotide-binding oligomerization domain-containing protein 2 isoform X1.	0.416
LOC106562391	IL-10	ENSSSAP00000040048	ENSSSAP00000068333	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like.	Interleukin-10-like.	0.416
LOC106562391	LOC100136512	ENSSSAP00000040048	ENSSSAP00000080196	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like.	Interleukin-10.	0.416
LOC106562391	TLR-2	ENSSSAP00000040048	ENSSSAP00000063294	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like.	Toll-like receptor 13.	0.605
LOC106562391	myd88	ENSSSAP00000040048	ENSSSAP00000080060	LOW QUALITY PROTEIN: nucleotide-binding oligomerization domain-containing protein 2-like.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.552