25 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106600975	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (1023 aa)
	spop	Speckle-type POZ protein. (375 aa)
	ENSSSAP00000001779	Speckle-type POZ protein-like A. (249 aa)
	LOC106606244	Ubiquitin carboxyl-terminal hydrolase. (501 aa)
	LOC106585043	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (566 aa)
	LOC106605693	Metalloendopeptidase. (722 aa)
	LOC106605676	Metalloendopeptidase. (526 aa)
	LOC106567666	E3 ubiquitin-protein ligase TRIM37-like isoform X1. (972 aa)
	LOC106592035	TNF receptor-associated factor 6-like. (367 aa)
	LOC106563020	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (596 aa)
	LOC106562692	TNF receptor-associated factor 6-like. (377 aa)
	LOC106582586	Speckle-type POZ protein-like A. (589 aa)
	LOC106571460	Meprin A subunit. (658 aa)
	LOC106571464	Metalloendopeptidase. (643 aa)
	traf4	Salmo salar TNF receptor-associated factor 4 (traf4), mRNA. (547 aa)
	LOC106563303	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (526 aa)
	traf2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (519 aa)
	traf3	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (576 aa)
	trim37	E3 ubiquitin-protein ligase TRIM37 isoform X2. (951 aa)
	LOC106585784	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (572 aa)
	LOC106564804	TNF receptor-associated factor. (470 aa)
	LOC106585142	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (628 aa)
	SPOP	Speckle-type POZ protein. (425 aa)
	LOC106581191	TNF receptor-associated factor. (470 aa)
	LOC106567744	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (595 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000001779	SPOP	ENSSSAP00000001779	ENSSSAP00000095114	Speckle-type POZ protein-like A.	Speckle-type POZ protein.	0.901
ENSSSAP00000001779	spop	ENSSSAP00000001779	ENSSSAP00000001703	Speckle-type POZ protein-like A.	Speckle-type POZ protein.	0.901
LOC106562692	LOC106563020	ENSSSAP00000029190	ENSSSAP00000025941	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.826
LOC106562692	LOC106563303	ENSSSAP00000029190	ENSSSAP00000042921	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.826
LOC106562692	LOC106564804	ENSSSAP00000029190	ENSSSAP00000082853	TNF receptor-associated factor 6-like.	TNF receptor-associated factor.	0.867
LOC106562692	LOC106567666	ENSSSAP00000029190	ENSSSAP00000019215	TNF receptor-associated factor 6-like.	E3 ubiquitin-protein ligase TRIM37-like isoform X1.	0.583
LOC106562692	LOC106567744	ENSSSAP00000029190	ENSSSAP00000109028	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.826
LOC106562692	LOC106581191	ENSSSAP00000029190	ENSSSAP00000096665	TNF receptor-associated factor 6-like.	TNF receptor-associated factor.	0.468
LOC106562692	LOC106585043	ENSSSAP00000029190	ENSSSAP00000005618	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.867
LOC106562692	LOC106585142	ENSSSAP00000029190	ENSSSAP00000091396	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.826
LOC106562692	LOC106585784	ENSSSAP00000029190	ENSSSAP00000076419	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.836
LOC106562692	LOC106592035	ENSSSAP00000029190	ENSSSAP00000020342	TNF receptor-associated factor 6-like.	TNF receptor-associated factor 6-like.	0.900
LOC106562692	LOC106600975	ENSSSAP00000029190	ENSSSAP00000077230	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.867
LOC106562692	LOC106606244	ENSSSAP00000029190	ENSSSAP00000005361	TNF receptor-associated factor 6-like.	Ubiquitin carboxyl-terminal hydrolase.	0.689
LOC106562692	traf2	ENSSSAP00000029190	ENSSSAP00000045007	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.826
LOC106562692	traf3	ENSSSAP00000029190	ENSSSAP00000068840	TNF receptor-associated factor 6-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.867
LOC106562692	traf4	ENSSSAP00000029190	ENSSSAP00000042516	TNF receptor-associated factor 6-like.	Salmo salar TNF receptor-associated factor 4 (traf4), mRNA.	0.468
LOC106562692	trim37	ENSSSAP00000029190	ENSSSAP00000071218	TNF receptor-associated factor 6-like.	E3 ubiquitin-protein ligase TRIM37 isoform X2.	0.583
LOC106563020	LOC106562692	ENSSSAP00000025941	ENSSSAP00000029190	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor 6-like.	0.826
LOC106563020	LOC106564804	ENSSSAP00000025941	ENSSSAP00000082853	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor.	0.651