34 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106589058	Tumor necrosis factor-like. (244 aa)
	LOC106592746	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family. (160 aa)
	LOC106601456	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (238 aa)
	ENSSSAP00000010071	annotation not available (205 aa)
	LOC106578371	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family. (291 aa)
	tn13b	Tumor necrosis factor ligand superfamily member 13B isoform X1; Belongs to the tumor necrosis factor family. (265 aa)
	ENSSSAP00000035278	annotation not available (172 aa)
	LOC106563681	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family. (321 aa)
	LOC100136509	Tumor necrosis factor alpha. (244 aa)
	LOC106577651	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family. (253 aa)
	ENSSSAP00000046167	annotation not available (165 aa)
	LOC106606848	Uncharacterized protein LOC106606848; Belongs to the tumor necrosis factor family. (220 aa)
	LOC106606846	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (238 aa)
	tnfsf11	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family. (284 aa)
	ENSSSAP00000055672	annotation not available (204 aa)
	tnf-alpha-2	Salmo salar tumor necrosis factor alpha-2 precursor (tnf-alpha-2), mRNA. (247 aa)
	LOC106582173	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (270 aa)
	LOC106613961	Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family. (269 aa)
	LOC106592211	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	LOC106609048	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family. (327 aa)
	TNFL6	Tumor necrosis factor ligand superfamily member 6; Belongs to the tumor necrosis factor family. (355 aa)
	cd40l	CD40 ligand; Belongs to the tumor necrosis factor family. (264 aa)
	tnf-alpha-1	Tumor necrosis factor alpha-1 precursor. (246 aa)
	LOC106605216	Uncharacterized protein LOC106605216; Belongs to the tumor necrosis factor family. (203 aa)
	LOC106586658	Tumor necrosis factor ligand superfamily member 13B-like; Belongs to the tumor necrosis factor family. (253 aa)
	ENSSSAP00000085883	annotation not available (242 aa)
	LOC106582173-2	Tumor necrosis factor ligand superfamily member 11-like. (270 aa)
	LOC106578044	Tumor necrosis factor ligand superfamily member 10-like isoform X2; Belongs to the tumor necrosis factor family. (329 aa)
	LOC106585332	Tumor necrosis factor ligand superfamily member 15-like; Belongs to the tumor necrosis factor family. (239 aa)
	tnfsf13	Tumor necrosis factor ligand superfamily member 13 isoform X1; Belongs to the tumor necrosis factor family. (235 aa)
	LOC106579980	Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family. (264 aa)
	LOC106575455	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	LOC106590519	Tumor necrosis factor ligand superfamily member 10-like isoform X2; Belongs to the tumor necrosis factor family. (289 aa)
	LOC106608761	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family. (242 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000010071	ENSSSAP00000085883	ENSSSAP00000010071	ENSSSAP00000085883	annotation not available	annotation not available	0.506
ENSSSAP00000010071	LOC106575455	ENSSSAP00000010071	ENSSSAP00000107438	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.506
ENSSSAP00000010071	LOC106577651	ENSSSAP00000010071	ENSSSAP00000044799	annotation not available	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.	0.595
ENSSSAP00000010071	LOC106582173	ENSSSAP00000010071	ENSSSAP00000056233	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.506
ENSSSAP00000010071	LOC106582173-2	ENSSSAP00000010071	ENSSSAP00000089450	annotation not available	Tumor necrosis factor ligand superfamily member 11-like.	0.506
ENSSSAP00000010071	LOC106586658	ENSSSAP00000010071	ENSSSAP00000076026	annotation not available	Tumor necrosis factor ligand superfamily member 13B-like; Belongs to the tumor necrosis factor family.	0.596
ENSSSAP00000010071	LOC106592211	ENSSSAP00000010071	ENSSSAP00000058440	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.506
ENSSSAP00000010071	LOC106608761	ENSSSAP00000010071	ENSSSAP00000117840	annotation not available	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.	0.595
ENSSSAP00000010071	cd40l	ENSSSAP00000010071	ENSSSAP00000070829	annotation not available	CD40 ligand; Belongs to the tumor necrosis factor family.	0.693
ENSSSAP00000010071	tn13b	ENSSSAP00000010071	ENSSSAP00000028895	annotation not available	Tumor necrosis factor ligand superfamily member 13B isoform X1; Belongs to the tumor necrosis factor family.	0.596
ENSSSAP00000010071	tnf-alpha-1	ENSSSAP00000010071	ENSSSAP00000075795	annotation not available	Tumor necrosis factor alpha-1 precursor.	0.552
ENSSSAP00000010071	tnf-alpha-2	ENSSSAP00000010071	ENSSSAP00000055689	annotation not available	Salmo salar tumor necrosis factor alpha-2 precursor (tnf-alpha-2), mRNA.	0.552
ENSSSAP00000010071	tnfsf11	ENSSSAP00000010071	ENSSSAP00000055563	annotation not available	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family.	0.506
ENSSSAP00000046167	LOC106606848	ENSSSAP00000046167	ENSSSAP00000049757	annotation not available	Uncharacterized protein LOC106606848; Belongs to the tumor necrosis factor family.	0.476
ENSSSAP00000085883	ENSSSAP00000010071	ENSSSAP00000085883	ENSSSAP00000010071	annotation not available	annotation not available	0.506
ENSSSAP00000085883	LOC106577651	ENSSSAP00000085883	ENSSSAP00000044799	annotation not available	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.	0.618
ENSSSAP00000085883	LOC106586658	ENSSSAP00000085883	ENSSSAP00000076026	annotation not available	Tumor necrosis factor ligand superfamily member 13B-like; Belongs to the tumor necrosis factor family.	0.674
ENSSSAP00000085883	LOC106592746	ENSSSAP00000085883	ENSSSAP00000000773	annotation not available	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family.	0.506
ENSSSAP00000085883	LOC106608761	ENSSSAP00000085883	ENSSSAP00000117840	annotation not available	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.	0.618
ENSSSAP00000085883	cd40l	ENSSSAP00000085883	ENSSSAP00000070829	annotation not available	CD40 ligand; Belongs to the tumor necrosis factor family.	0.561