89 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106565988	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (808 aa)
	LOC106573120	Hepatocyte growth factor receptor-like. (1430 aa)
	LOC106602207	semaphorin-4F-like; Belongs to the semaphorin family. (708 aa)
	LOC106573451	Semaphorin-3ab-like; Belongs to the semaphorin family. (806 aa)
	ENSSSAP00000038527	Semaphorin-3B-like. (1264 aa)
	LOC106565756	Macrophage-stimulating protein receptor-like. (1378 aa)
	sema3g	semaphorin-3G; Belongs to the semaphorin family. (772 aa)
	LOC106605335	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1106 aa)
	plxna1	plexin-A1 isoform X2. (1895 aa)
	LOC106588355	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1052 aa)
	ENSSSAP00000025008	annotation not available (427 aa)
	LOC106573450	semaphorin-3E-like isoform X1; Belongs to the semaphorin family. (804 aa)
	LOC106575804	semaphorin-5B-like isoform X3; Belongs to the semaphorin family. (635 aa)
	LOC106605326	semaphorin-7A-like; Belongs to the semaphorin family. (640 aa)
	LOC106609494	semaphorin-3C-like. (790 aa)
	LOC106562116	semaphorin-7A-like isoform X1; Belongs to the semaphorin family. (633 aa)
	ENSSSAP00000018198	Semaphorin-3D-like. (318 aa)
	LOC106576426	semaphorin-3C-like; Belongs to the semaphorin family. (745 aa)
	LOC106576598	plexin-B2-like. (1859 aa)
	ENSSSAP00000013005	annotation not available (608 aa)
	LOC106609650	Semaphorin-3aa-like; Belongs to the semaphorin family. (403 aa)
	LOC106565257	plexin-B1-like isoform X2. (2331 aa)
	LOC106569872	semaphorin-4A-like isoform X1; Belongs to the semaphorin family. (831 aa)
	ENSSSAP00000006735	annotation not available (620 aa)
	LOC106605438	semaphorin-4A-like; Belongs to the semaphorin family. (737 aa)
	LOC106613040	semaphorin-4G-like; Belongs to the semaphorin family. (931 aa)
	LOC106582868	Macrophage-stimulating protein receptor-like. (1378 aa)
	LOC106582865	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (799 aa)
	LOC106585097	semaphorin-4C-like; Belongs to the semaphorin family. (866 aa)
	LOC106600027	semaphorin-6B-like isoform X1; Belongs to the semaphorin family. (910 aa)
	plxna2	plexin-A2. (1909 aa)
	LOC106569521	semaphorin-4E-like; Belongs to the semaphorin family. (778 aa)
	ENSSSAP00000114817	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba. (501 aa)
	sema5b	semaphorin-5B isoform X3. (1111 aa)
	LOC106578437	semaphorin-5A-like. (1084 aa)
	PLXND1-2	plexin-D1-like. (1838 aa)
	LOC106561204	semaphorin-3E-like isoform X1; Belongs to the semaphorin family. (862 aa)
	LOC106561202	semaphorin-3D-like; Belongs to the semaphorin family. (818 aa)
	LOC106561177	semaphorin-4B-like; Belongs to the semaphorin family. (849 aa)
	SEMA6A-2	semaphorin-6A-like isoform X1; Belongs to the semaphorin family. (1019 aa)
	LOC106566791	Semaphorin-3ab-like isoform X1; Belongs to the semaphorin family. (744 aa)
	LOC106572221	semaphorin-3F-like; Belongs to the semaphorin family. (786 aa)
	LOC106566890	plexin-A1-like isoform X4. (1884 aa)
	LOC106576367	plexin-A4-like. (1884 aa)
	LOC106572068	Plexin A3 isoform X2. (1913 aa)
	LOC106572747	plexin-B1-like isoform X1. (2189 aa)
	LOC106584397	semaphorin-4E-like; Belongs to the semaphorin family. (816 aa)
	LOC106562535	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1266 aa)
	LOC106584391	semaphorin-6B-like isoform X4; Belongs to the semaphorin family. (909 aa)
	LOC106587207	semaphorin-7A-like; Belongs to the semaphorin family. (631 aa)
	LOC106572368	plexin-A1-like isoform X2. (1900 aa)
	LOC106567158	plexin-A2-like. (1913 aa)
	LOC106566493	Plexin A3-like isoform X2. (1912 aa)
	LOC106580489	semaphorin-4C-like isoform X2; Belongs to the semaphorin family. (864 aa)
	LOC106583629	plexin-B1-like isoform X1. (2242 aa)
	LOC106577257	semaphorin-4G-like; Belongs to the semaphorin family. (1081 aa)
	LOC106561553	Hepatocyte growth factor receptor-like. (1423 aa)
	LOC106566976	plexin-B1-like. (2252 aa)
	LOC106586418	semaphorin-5B-like isoform X2. (1107 aa)
	ENSSSAP00000090769	Si:ch211-113g11.6. (575 aa)
	LOC106567247	semaphorin-3F-like. (803 aa)
	LOC106580978	semaphorin-6D-like isoform X2; Belongs to the semaphorin family. (1106 aa)
	LOC106569916	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (1047 aa)
	LOC106613816	Nuclear receptor ROR-beta-like. (1034 aa)
	LOC106572382	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (769 aa)
	LOC106582759	Guanine nucleotide-binding protein G(T) subunit alpha-like. (1031 aa)
	LOC106582756	Macrophage-stimulating protein receptor-like. (1374 aa)
	LOC106613811	semaphorin-4E-like; Belongs to the semaphorin family. (794 aa)
	LOC106572304	Semaphorin-3ab-like; Belongs to the semaphorin family. (740 aa)
	ENSSSAP00000080055	annotation not available (1102 aa)
	LOC106583586	plexin-A1-like isoform X2. (1907 aa)
	ENSSSAP00000079291	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl. (783 aa)
	LOC106572278	LOW QUALITY PROTEIN: semaphorin-3B-like; Belongs to the semaphorin family. (819 aa)
	PLXNA2	plexin-A2-like. (1906 aa)
	LOC106578059	semaphorin-4F-like; Belongs to the semaphorin family. (408 aa)
	LOC106578306	semaphorin-4G-like; Belongs to the semaphorin family. (889 aa)
	LOC106566214	semaphorin-3D-like; Belongs to the semaphorin family. (780 aa)
	LOC106566829	semaphorin-3F-like. (769 aa)
	sema4d	semaphorin-4D isoform X1; Belongs to the semaphorin family. (920 aa)
	SEMA6A	semaphorin-6A-like isoform X1; Belongs to the semaphorin family. (1012 aa)
	LOC106588312	semaphorin-4A-like isoform X2; Belongs to the semaphorin family. (827 aa)
	LOC106613204	semaphorin-4E-like; Belongs to the semaphorin family. (777 aa)
	LOC106560979	plexin-B2-like. (1864 aa)
	LOC106587727	semaphorin-6D-like isoform X1; Belongs to the semaphorin family. (440 aa)
	LOC106573467	Semaphorin-4B-like. (883 aa)
	LOC106565754	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (789 aa)
	sema4g	semaphorin-4G isoform X1; Belongs to the semaphorin family. (896 aa)
	LOC106584474	plexin-B2-like. (1862 aa)
	LOC106573452	semaphorin-3D-like; Belongs to the semaphorin family. (807 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000006735	ENSSSAP00000013005	ENSSSAP00000006735	ENSSSAP00000013005	annotation not available	annotation not available	0.477
ENSSSAP00000006735	ENSSSAP00000025008	ENSSSAP00000006735	ENSSSAP00000025008	annotation not available	annotation not available	0.470
ENSSSAP00000006735	LOC106560979	ENSSSAP00000006735	ENSSSAP00000057894	annotation not available	plexin-B2-like.	0.477
ENSSSAP00000006735	LOC106561553	ENSSSAP00000006735	ENSSSAP00000092894	annotation not available	Hepatocyte growth factor receptor-like.	0.669
ENSSSAP00000006735	LOC106565257	ENSSSAP00000006735	ENSSSAP00000011856	annotation not available	plexin-B1-like isoform X2.	0.477
ENSSSAP00000006735	LOC106565756	ENSSSAP00000006735	ENSSSAP00000037683	annotation not available	Macrophage-stimulating protein receptor-like.	0.669
ENSSSAP00000006735	LOC106566493	ENSSSAP00000006735	ENSSSAP00000096031	annotation not available	Plexin A3-like isoform X2.	0.470
ENSSSAP00000006735	LOC106566890	ENSSSAP00000006735	ENSSSAP00000104354	annotation not available	plexin-A1-like isoform X4.	0.470
ENSSSAP00000006735	LOC106566976	ENSSSAP00000006735	ENSSSAP00000092749	annotation not available	plexin-B1-like.	0.477
ENSSSAP00000006735	LOC106567158	ENSSSAP00000006735	ENSSSAP00000096520	annotation not available	plexin-A2-like.	0.470
ENSSSAP00000006735	LOC106572068	ENSSSAP00000006735	ENSSSAP00000099445	annotation not available	Plexin A3 isoform X2.	0.470
ENSSSAP00000006735	LOC106572368	ENSSSAP00000006735	ENSSSAP00000096649	annotation not available	plexin-A1-like isoform X2.	0.470
ENSSSAP00000006735	LOC106572747	ENSSSAP00000006735	ENSSSAP00000099371	annotation not available	plexin-B1-like isoform X1.	0.477
ENSSSAP00000006735	LOC106573120	ENSSSAP00000006735	ENSSSAP00000042297	annotation not available	Hepatocyte growth factor receptor-like.	0.669
ENSSSAP00000006735	LOC106576367	ENSSSAP00000006735	ENSSSAP00000101436	annotation not available	plexin-A4-like.	0.470
ENSSSAP00000006735	LOC106576598	ENSSSAP00000006735	ENSSSAP00000016580	annotation not available	plexin-B2-like.	0.477
ENSSSAP00000006735	LOC106582756	ENSSSAP00000006735	ENSSSAP00000082599	annotation not available	Macrophage-stimulating protein receptor-like.	0.669
ENSSSAP00000006735	LOC106582868	ENSSSAP00000006735	ENSSSAP00000119787	annotation not available	Macrophage-stimulating protein receptor-like.	0.669
ENSSSAP00000006735	LOC106583586	ENSSSAP00000006735	ENSSSAP00000079703	annotation not available	plexin-A1-like isoform X2.	0.470
ENSSSAP00000006735	LOC106583629	ENSSSAP00000006735	ENSSSAP00000094178	annotation not available	plexin-B1-like isoform X1.	0.477