15 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106599662	Vacuolar protein sorting-associated protein 4B isoform X1; Belongs to the AAA ATPase family. (510 aa)
	mitd1	MIT domain-containing protein 1 isoform X1. (250 aa)
	LOC106587558	Serine/threonine-protein kinase ULK3-like. (507 aa)
	LOC106562348	Serine/threonine-protein kinase ULK3-like isoform X1; Belongs to the protein kinase superfamily. (467 aa)
	spg20	Spartin isoform X2. (564 aa)
	CAPN7	Calpain-7-like; Belongs to the peptidase C2 family. (828 aa)
	LOC106611054	Uncharacterized protein LOC106611054 isoform X1. (787 aa)
	LOC106584355	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family. (441 aa)
	LOC106560901	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family. (516 aa)
	LOC106613857	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family. (440 aa)
	ENSSSAP00000017174	annotation not available (290 aa)
	spart	Spartin isoform X2. (556 aa)
	LOC106589845	Ribosomal protein S6 kinase delta-1-like isoform X1. (816 aa)
	LOC106580974	Spartin-like isoform X2. (556 aa)
	VPS4B	Vacuolar protein sorting-associated protein 4B-like isoform X1; Belongs to the AAA ATPase family. (527 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPN7	mitd1	ENSSSAP00000069955	ENSSSAP00000118722	Calpain-7-like; Belongs to the peptidase C2 family.	MIT domain-containing protein 1 isoform X1.	0.480
LOC106560901	LOC106584355	ENSSSAP00000037774	ENSSSAP00000042611	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	0.400
LOC106560901	LOC106599662	ENSSSAP00000037774	ENSSSAP00000110779	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4B isoform X1; Belongs to the AAA ATPase family.	0.403
LOC106560901	LOC106613857	ENSSSAP00000037774	ENSSSAP00000032925	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	0.400
LOC106560901	VPS4B	ENSSSAP00000037774	ENSSSAP00000113459	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4B-like isoform X1; Belongs to the AAA ATPase family.	0.403
LOC106580974	mitd1	ENSSSAP00000112590	ENSSSAP00000118722	Spartin-like isoform X2.	MIT domain-containing protein 1 isoform X1.	0.511
LOC106580974	spart	ENSSSAP00000112590	ENSSSAP00000016206	Spartin-like isoform X2.	Spartin isoform X2.	0.902
LOC106580974	spg20	ENSSSAP00000112590	ENSSSAP00000079317	Spartin-like isoform X2.	Spartin isoform X2.	0.900
LOC106584355	LOC106560901	ENSSSAP00000042611	ENSSSAP00000037774	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	0.400
LOC106599662	LOC106560901	ENSSSAP00000110779	ENSSSAP00000037774	Vacuolar protein sorting-associated protein 4B isoform X1; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	0.403
LOC106613857	LOC106560901	ENSSSAP00000032925	ENSSSAP00000037774	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	0.400
VPS4B	LOC106560901	ENSSSAP00000113459	ENSSSAP00000037774	Vacuolar protein sorting-associated protein 4B-like isoform X1; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.	0.403
mitd1	CAPN7	ENSSSAP00000118722	ENSSSAP00000069955	MIT domain-containing protein 1 isoform X1.	Calpain-7-like; Belongs to the peptidase C2 family.	0.480
mitd1	LOC106580974	ENSSSAP00000118722	ENSSSAP00000112590	MIT domain-containing protein 1 isoform X1.	Spartin-like isoform X2.	0.511
mitd1	spart	ENSSSAP00000118722	ENSSSAP00000016206	MIT domain-containing protein 1 isoform X1.	Spartin isoform X2.	0.477
mitd1	spg20	ENSSSAP00000118722	ENSSSAP00000079317	MIT domain-containing protein 1 isoform X1.	Spartin isoform X2.	0.511
spart	LOC106580974	ENSSSAP00000016206	ENSSSAP00000112590	Spartin isoform X2.	Spartin-like isoform X2.	0.902
spart	mitd1	ENSSSAP00000016206	ENSSSAP00000118722	Spartin isoform X2.	MIT domain-containing protein 1 isoform X1.	0.477
spart	spg20	ENSSSAP00000016206	ENSSSAP00000079317	Spartin isoform X2.	Spartin isoform X2.	0.902
spg20	LOC106580974	ENSSSAP00000079317	ENSSSAP00000112590	Spartin isoform X2.	Spartin-like isoform X2.	0.900