(96 nodes) Mitochondrial translation elongation network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (342 aa)
	mrps10	Mitochondrial ribosomal protein S10. (208 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (195 aa)
	mrpl13	39S ribosomal protein L13, mitochondrial. (179 aa)
	ENSFHEP00000001155	Mitochondrial ribosomal protein S2. (242 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (279 aa)
	mrps24	Mitochondrial ribosomal protein S24. (171 aa)
	mrps35	Mitochondrial ribosomal protein S35. (343 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	mrpl45	Mitochondrial ribosomal protein L45. (318 aa)
	mrps25	Mitochondrial ribosomal protein S25. (176 aa)
	mrps30	Mitochondrial ribosomal protein S30. (422 aa)
	mrpl14	39S ribosomal protein L14, mitochondrial. (155 aa)
	ENSFHEP00000004492	Mitochondrial ribosomal protein S6. (122 aa)
	mrps26	Mitochondrial ribosomal protein S26. (227 aa)
	mrpl34	Mitochondrial ribosomal protein L34. (126 aa)
	ptcd3	Pentatricopeptide repeat domain 3. (665 aa)
	gfm1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...] (748 aa)
	ENSFHEP00000005285	Uncharacterized protein. (149 aa)
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (165 aa)
	ENSFHEP00000006168	Uncharacterized protein. (110 aa)
	mrpl47	39S ribosomal protein L47, mitochondrial. (267 aa)
	mrpl55	Zgc:171480. (139 aa)
	mrpl33	Mitochondrial ribosomal protein L33. (63 aa)
	mrpl9	Mitochondrial ribosomal protein L9. (289 aa)
	mrpl24	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (265 aa)
	mrpl43	Mitochondrial ribosomal protein L43. (158 aa)
	LOC105918212	Mitochondrial ribosomal protein L23. (205 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (174 aa)
	chchd1	Coiled-coil-helix-coiled-coil-helix domain containing 1. (128 aa)
	eral1	Era-like 12S mitochondrial rRNA chaperone 1. (469 aa)
	mrrf	Mitochondrial ribosome recycling factor. (310 aa)
	mrps21	Mitochondrial ribosomal protein S21. (87 aa)
	mrpl30	Mitochondrial ribosomal protein L30. (188 aa)
	tsfm	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (307 aa)
	mrpl46	39S ribosomal protein L46, mitochondrial. (293 aa)
	LOC105923102	Uncharacterized protein. (214 aa)
	mrpl16	Mitochondrial ribosomal protein L16. (263 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	LOC105918660	Mitochondrial ribosomal protein S18C. (135 aa)
	mrpl22	39S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family. (209 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	LOC105925237	Zgc:110130. (287 aa)
	ENSFHEP00000016354	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	mrpl58	Mitochondrial ribosomal protein L58. (196 aa)
	LOC105924827	28S ribosomal protein S18c, mitochondrial-like. (128 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (212 aa)
	ENSFHEP00000017354	Mitochondrial ribosomal protein S27. (178 aa)
	ENSFHEP00000017533	Uncharacterized protein. (130 aa)
	rpl23	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (126 aa)
	mrpl57	Mitochondrial ribosomal protein L57. (103 aa)
	mrpl48	Mitochondrial ribosomal protein L48. (210 aa)
	mrpl39	Mitochondrial ribosomal protein L39. (366 aa)
	mrps22	Mitochondrial ribosomal protein S22. (338 aa)
	tufm	Tu translation elongation factor, mitochondrial. (432 aa)
	aurkaip1	Aurora kinase A interacting protein 1. (211 aa)
	ENSFHEP00000020242	Uncharacterized protein. (78 aa)
	mrps16	Mitochondrial ribosomal protein S16. (137 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (286 aa)
	mrto4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (235 aa)
	mrps15	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (259 aa)
	ppp1r26	Uncharacterized protein. (1111 aa)
	mrpl44	Mitochondrial ribosomal protein L44. (376 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (183 aa)
	mrps7	Mitochondrial ribosomal protein S7. (229 aa)
	mrps31	Mitochondrial ribosomal protein S31. (388 aa)
	ENSFHEP00000022745	Mitochondrial ribosomal protein L21. (204 aa)
	mrps12	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (148 aa)
	mrpl10	39S ribosomal protein L10, mitochondrial. (252 aa)
	ENSFHEP00000024568	Mitochondrial ribosomal protein S28. (126 aa)
	mrpl28	Mitochondrial ribosomal protein L28. (252 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (147 aa)
	mrps5	Mitochondrial ribosomal protein S5. (359 aa)
	mrps9	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (380 aa)
	mrps18a	Mitochondrial ribosomal protein S18A. (208 aa)
	mrpl35	Mitochondrial ribosomal protein L35. (174 aa)
	mrps33	Mitochondrial ribosomal protein S33. (106 aa)
	ENSFHEP00000027906	Mitochondrial ribosomal protein L15. (152 aa)
	ccdc105	Coiled-coil domain containing 105. (424 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (320 aa)
	mrpl53	Mitochondrial ribosomal protein L53. (108 aa)
	mrpl51	Mitochondrial ribosomal protein L51. (131 aa)
	mrpl12	Mitochondrial ribosomal protein L12. (185 aa)
	rpl11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	LOC105938893	ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
	mrps18b	Mitochondrial ribosomal protein S18B. (247 aa)
	mrpl42	Mitochondrial ribosomal protein L42. (145 aa)
	mrpl52	Mitochondrial ribosomal protein L52. (128 aa)
	mrps34	Mitochondrial ribosomal protein S34. (219 aa)
	psmg1	Uncharacterized protein. (280 aa)
	ENSFHEP00000033798	Growth arrest and DNA-damage-inducible, gamma interacting protein 1. (207 aa)
	dap3	Death associated protein 3. (395 aa)
	mrpl41	Mitochondrial ribosomal protein L41. (135 aa)
	mrps14	Mitochondrial ribosomal protein S14. (149 aa)
	mrps17	Mitochondrial ribosomal protein S17. (145 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000001155	ENSFHEP00000004492	ENSFHEP00000001155	ENSFHEP00000004492	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein S6.	0.998
ENSFHEP00000001155	ENSFHEP00000005285	ENSFHEP00000001155	ENSFHEP00000005285	Mitochondrial ribosomal protein S2.	Uncharacterized protein.	0.967
ENSFHEP00000001155	ENSFHEP00000006168	ENSFHEP00000001155	ENSFHEP00000006168	Mitochondrial ribosomal protein S2.	Uncharacterized protein.	0.910
ENSFHEP00000001155	ENSFHEP00000016354	ENSFHEP00000001155	ENSFHEP00000016354	Mitochondrial ribosomal protein S2.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.994
ENSFHEP00000001155	ENSFHEP00000017354	ENSFHEP00000001155	ENSFHEP00000017354	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein S27.	0.975
ENSFHEP00000001155	ENSFHEP00000017533	ENSFHEP00000001155	ENSFHEP00000017533	Mitochondrial ribosomal protein S2.	Uncharacterized protein.	0.764
ENSFHEP00000001155	ENSFHEP00000020242	ENSFHEP00000001155	ENSFHEP00000020242	Mitochondrial ribosomal protein S2.	Uncharacterized protein.	0.988
ENSFHEP00000001155	ENSFHEP00000022745	ENSFHEP00000001155	ENSFHEP00000022745	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein L21.	0.994
ENSFHEP00000001155	ENSFHEP00000024568	ENSFHEP00000001155	ENSFHEP00000024568	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein S28.	0.972
ENSFHEP00000001155	ENSFHEP00000027906	ENSFHEP00000001155	ENSFHEP00000027906	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein L15.	0.986
ENSFHEP00000001155	ENSFHEP00000033798	ENSFHEP00000001155	ENSFHEP00000033798	Mitochondrial ribosomal protein S2.	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	0.826
ENSFHEP00000001155	LOC105918212	ENSFHEP00000001155	ENSFHEP00000009722	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein L23.	0.981
ENSFHEP00000001155	LOC105918660	ENSFHEP00000001155	ENSFHEP00000014024	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein S18C.	0.962
ENSFHEP00000001155	LOC105923102	ENSFHEP00000001155	ENSFHEP00000012569	Mitochondrial ribosomal protein S2.	Uncharacterized protein.	0.983
ENSFHEP00000001155	LOC105924827	ENSFHEP00000001155	ENSFHEP00000017039	Mitochondrial ribosomal protein S2.	28S ribosomal protein S18c, mitochondrial-like.	0.962
ENSFHEP00000001155	LOC105925237	ENSFHEP00000001155	ENSFHEP00000015696	Mitochondrial ribosomal protein S2.	Zgc:110130.	0.926
ENSFHEP00000001155	LOC105938893	ENSFHEP00000001155	ENSFHEP00000030578	Mitochondrial ribosomal protein S2.	ADP-ribosylation factor-like 6 interacting protein 1.	0.983
ENSFHEP00000001155	MRPL49	ENSFHEP00000001155	ENSFHEP00000010310	Mitochondrial ribosomal protein S2.	Mitochondrial ribosomal protein L49.	0.944
ENSFHEP00000001155	aurkaip1	ENSFHEP00000001155	ENSFHEP00000019391	Mitochondrial ribosomal protein S2.	Aurora kinase A interacting protein 1.	0.960
ENSFHEP00000001155	ccdc105	ENSFHEP00000001155	ENSFHEP00000027933	Mitochondrial ribosomal protein S2.	Coiled-coil domain containing 105.	0.983