(26 nodes) Organellar large ribosomal subunit, and Organellar small ribosomal subunit network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (342 aa)
	mrpl13	39S ribosomal protein L13, mitochondrial. (179 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (279 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	ENSFHEP00000004492	Mitochondrial ribosomal protein S6. (122 aa)
	mrpl33	Mitochondrial ribosomal protein L33. (63 aa)
	mrpl9	Mitochondrial ribosomal protein L9. (289 aa)
	mrpl24	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (265 aa)
	mrpl16	Mitochondrial ribosomal protein L16. (263 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	mrpl22	39S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family. (209 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	ENSFHEP00000016354	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	rpl23	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (126 aa)
	tufm	Tu translation elongation factor, mitochondrial. (432 aa)
	mrps16	Mitochondrial ribosomal protein S16. (137 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (286 aa)
	mrto4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (235 aa)
	mrps15	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (259 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (183 aa)
	ENSFHEP00000022745	Mitochondrial ribosomal protein L21. (204 aa)
	mrps12	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (147 aa)
	ENSFHEP00000027906	Mitochondrial ribosomal protein L15. (152 aa)
	mrpl12	Mitochondrial ribosomal protein L12. (185 aa)
	rpl11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000004492	ENSFHEP00000016354	ENSFHEP00000004492	ENSFHEP00000016354	Mitochondrial ribosomal protein S6.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
ENSFHEP00000004492	ENSFHEP00000022745	ENSFHEP00000004492	ENSFHEP00000022745	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L21.	0.999
ENSFHEP00000004492	ENSFHEP00000027906	ENSFHEP00000004492	ENSFHEP00000027906	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L15.	0.998
ENSFHEP00000004492	mrpl11	ENSFHEP00000004492	ENSFHEP00000013983	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.996
ENSFHEP00000004492	mrpl12	ENSFHEP00000004492	ENSFHEP00000029677	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L12.	0.999
ENSFHEP00000004492	mrpl13	ENSFHEP00000004492	ENSFHEP00000001151	Mitochondrial ribosomal protein S6.	39S ribosomal protein L13, mitochondrial.	0.999
ENSFHEP00000004492	mrpl16	ENSFHEP00000004492	ENSFHEP00000013841	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L16.	0.998
ENSFHEP00000004492	mrpl19	ENSFHEP00000004492	ENSFHEP00000020904	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L19.	0.999
ENSFHEP00000004492	mrpl2	ENSFHEP00000004492	ENSFHEP00000001280	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L2.	0.998
ENSFHEP00000004492	mrpl22	ENSFHEP00000004492	ENSFHEP00000014765	Mitochondrial ribosomal protein S6.	39S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family.	0.999
ENSFHEP00000004492	mrpl24	ENSFHEP00000004492	ENSFHEP00000009167	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.997
ENSFHEP00000004492	mrpl27	ENSFHEP00000004492	ENSFHEP00000025111	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L27.	0.999
ENSFHEP00000004492	mrpl3	ENSFHEP00000004492	ENSFHEP00000000037	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
ENSFHEP00000004492	mrpl32	ENSFHEP00000004492	ENSFHEP00000022177	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L32.	0.999
ENSFHEP00000004492	mrpl33	ENSFHEP00000004492	ENSFHEP00000008133	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L33.	0.999
ENSFHEP00000004492	mrpl4	ENSFHEP00000004492	ENSFHEP00000002333	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L4.	0.998
ENSFHEP00000004492	mrpl9	ENSFHEP00000004492	ENSFHEP00000009124	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein L9.	0.999
ENSFHEP00000004492	mrps12	ENSFHEP00000004492	ENSFHEP00000023517	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999
ENSFHEP00000004492	mrps15	ENSFHEP00000004492	ENSFHEP00000021336	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.999
ENSFHEP00000004492	mrps16	ENSFHEP00000004492	ENSFHEP00000020695	Mitochondrial ribosomal protein S6.	Mitochondrial ribosomal protein S16.	0.999