STRINGSTRING
rnf113a rnf113a ddx42 ddx42 cdc40 cdc40 dhx40 dhx40 LOC105937296 LOC105937296 cwc15 cwc15 plrg1 plrg1 cactin cactin ncbp2 ncbp2 snrpf snrpf parpbp parpbp ik ik prpf31 prpf31 cwf19l2 cwf19l2 snrnp200 snrnp200 pprc1 pprc1 ENSFHEP00000003141 ENSFHEP00000003141 LSM5 LSM5 fam32a fam32a nsrp1 nsrp1 cwc25 cwc25 snw1 snw1 LOC105925506 LOC105925506 WDR25 WDR25 dhx38 dhx38 rbm41 rbm41 wdr53 wdr53 sde2 sde2 ENSFHEP00000006275 ENSFHEP00000006275 zcrb1 zcrb1 ppie ppie lsm6 lsm6 lix1l lix1l lsm1 lsm1 cwc22 cwc22 yju2 yju2 spaca6 spaca6 LOC105917713 LOC105917713 snrnp70 snrnp70 SART1 SART1 lsm3 lsm3 snrpd3 snrpd3 sf3a1 sf3a1 ENSFHEP00000009615 ENSFHEP00000009615 ENSFHEP00000009658 ENSFHEP00000009658 tfip11 tfip11 dhx8 dhx8 bcas2 bcas2 phf5a phf5a slu7 slu7 cdc5l cdc5l crnkl1 crnkl1 NCBP1 NCBP1 ZNF830 ZNF830 SMU1 SMU1 ENSFHEP00000012172 ENSFHEP00000012172 lsm8 lsm8 dhx33 dhx33 sf3b1 sf3b1 ppil1 ppil1 lrmda lrmda snrpd2 snrpd2 LOC105931443 LOC105931443 ENSFHEP00000014400 ENSFHEP00000014400 ccdc12 ccdc12 ENSFHEP00000014705 ENSFHEP00000014705 LSM4 LSM4 txnl4a txnl4a snrpc snrpc usp39 usp39 zmat2 zmat2 bud13 bud13 sf3b3 sf3b3 dhx36 dhx36 nkap nkap mfap1 mfap1 wbp4 wbp4 sf3a3 sf3a3 ENSFHEP00000017392 ENSFHEP00000017392 alyref alyref aqr aqr ddx46 ddx46 sf3b5 sf3b5 WDR70 WDR70 dhx34 dhx34 prpf8 prpf8 ENSFHEP00000019092 ENSFHEP00000019092 ppil3 ppil3 bud31 bud31 prpf3 prpf3 LOC105927929 LOC105927929 prpf19 prpf19 dhx35 dhx35 ENSFHEP00000021011 ENSFHEP00000021011 LSM10 LSM10 prpf4 prpf4 ppih ppih daw1 daw1 sf3a2 sf3a2 cunh19orf54 cunh19orf54 snrpa snrpa snrnp27 snrnp27 ppwd1 ppwd1 cwc27 cwc27 lsm7 lsm7 ncmap ncmap ENSFHEP00000024755 ENSFHEP00000024755 rbm42 rbm42 LOC105917805 LOC105917805 syf2 syf2 snrnp40 snrnp40 DDX41 DDX41 lsm2 lsm2 ctnnbl1 ctnnbl1 wbp11 wbp11 ppil4 ppil4 SNRPG SNRPG UBL5 UBL5 ENSFHEP00000028727 ENSFHEP00000028727 ppil2 ppil2 eftud2 eftud2 rbm22 rbm22 dhx30 dhx30 snrpb2 snrpb2 prpf38a prpf38a fam50a fam50a sart3 sart3 ddx23 ddx23 GPR149 GPR149 LOC105939412 LOC105939412 ENSFHEP00000031931 ENSFHEP00000031931 ddx59 ddx59 ddx21 ddx21 snrpa1 snrpa1 snrpe snrpe cunh9orf78 cunh9orf78 prpf18 prpf18 TCERG1 TCERG1 rnpc3 rnpc3 zmat5 zmat5 sf3b2 sf3b2 dhx16 dhx16 gpkow gpkow dhx29 dhx29 prpf6 prpf6 sf3b6 sf3b6 SNIP1 SNIP1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnf113aRING finger protein 113A. (321 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (904 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (592 aa)
dhx40DEAH (Asp-Glu-Ala-His) box polypeptide 40. (740 aa)
LOC105937296XPA binding protein 2. (811 aa)
cwc15CWC15 spliceosome associated protein homolog. (239 aa)
plrg1Pleiotropic regulator 1. (445 aa)
cactinCactin. (910 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
snrpfSmall nuclear ribonucleoprotein polypeptide F. (114 aa)
parpbpPCNA-interacting partner. (586 aa)
ikIK cytokine. (656 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (569 aa)
cwf19l2CWF19 like cell cycle control factor 2. (923 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2084 aa)
pprc1PPARG related coactivator 1. (1342 aa)
ENSFHEP00000003141Uncharacterized protein. (58 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
fam32aFamily with sequence similarity 32 member A. (115 aa)
nsrp1Nuclear speckle splicing regulatory protein 1. (478 aa)
cwc25CWC25 spliceosome associated protein homolog. (398 aa)
snw1SNW domain containing 1. (544 aa)
LOC105925506Uncharacterized protein. (212 aa)
WDR25WD repeat domain 25. (488 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1250 aa)
rbm41RNA binding motif protein 41. (419 aa)
wdr53WD repeat domain 53. (387 aa)
sde2SDE2 telomere maintenance homolog (S. pombe). (387 aa)
ENSFHEP00000006275PWI domain-containing protein. (232 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
lix1lSplicing factor 3b, subunit 4. (689 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
cwc22CWC22 spliceosome associated protein homolog. (985 aa)
yju2YJU2 splicing factor homolog. (348 aa)
spaca6Ig-like domain-containing protein. (334 aa)
LOC105917713Src homology 2 domain containing transforming protein D, a. (416 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (469 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (773 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
sf3a1Splicing factor 3a, subunit 1. (851 aa)
ENSFHEP00000009615DRBM domain-containing protein. (391 aa)
ENSFHEP00000009658Uncharacterized protein. (109 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (836 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1243 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
phf5aPHD finger protein 5A. (110 aa)
slu7SLU7 homolog, splicing factor. (565 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (809 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (768 aa)
NCBP1Nuclear cap binding protein subunit 1. (796 aa)
ZNF830Zinc finger protein 830. (338 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
ENSFHEP00000012172Small nuclear ribonucleoprotein D1 polypeptide. (82 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
dhx33DEAH (Asp-Glu-Ala-His) box polypeptide 33. (643 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (193 aa)
lrmdaLeucine rich melanocyte differentiation associated. (233 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
LOC105931443Uncharacterized protein; Belongs to the DEAD box helicase family. (625 aa)
ENSFHEP00000014400Cwf21 domain-containing protein. (472 aa)
ccdc12Coiled-coil domain containing 12. (186 aa)
ENSFHEP00000014705Uncharacterized protein. (125 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (59 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (112 aa)
usp39Ubiquitin specific peptidase 39. (547 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
bud13BUD13 homolog. (500 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1013 aa)
nkapNFKB activating protein. (398 aa)
mfap1Microfibrillar-associated protein 1. (440 aa)
wbp4Uncharacterized protein. (393 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
ENSFHEP00000017392RRM domain-containing protein. (514 aa)
alyrefAly/REF export factor. (267 aa)
aqrAquarius intron-binding spliceosomal factor. (1467 aa)
ddx46ATP-dependent RNA helicase DDX46, putative. (1067 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
WDR70WD repeat domain 70. (644 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1125 aa)
prpf8Pre-mRNA processing factor 8. (2342 aa)
ENSFHEP00000019092Uncharacterized protein. (44 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
bud31BUD31 homolog. (144 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (685 aa)
LOC105927929DEAH (Asp-Glu-Ala-His) box helicase 15. (735 aa)
prpf19Pre-mRNA-processing factor 19. (505 aa)
dhx35DEAH-box helicase 35. (699 aa)
ENSFHEP00000021011PRKR interacting protein 1. (135 aa)
LSM10LSM10, U7 small nuclear RNA associated. (116 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
daw1WD_REPEATS_REGION domain-containing protein. (422 aa)
sf3a2Splicing factor 3a, subunit 2. (293 aa)
cunh19orf54Zgc:153119. (298 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (270 aa)
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (161 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (630 aa)
cwc27CWC27 spliceosome associated cyclophilin. (488 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (112 aa)
ncmapUncharacterized protein. (131 aa)
ENSFHEP00000024755Sm domain-containing protein. (73 aa)
rbm42RNA binding motif protein 42. (299 aa)
LOC105917805ISY1 splicing factor homolog. (356 aa)
syf2SYF2 pre-mRNA-splicing factor. (239 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
DDX41DEAD-box helicase 41. (614 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
ctnnbl1Catenin, beta like 1. (547 aa)
wbp11WW domain binding protein 11. (710 aa)
ppil4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (468 aa)
SNRPGSmall nuclear ribonucleoprotein G. (138 aa)
UBL5Ubiquitin like 5. (73 aa)
ENSFHEP00000028727Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (100 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (481 aa)
eftud2116 kDa U5 small nuclear ribonucleoprotein component. (971 aa)
rbm22Pre-mRNA-splicing factor RBM22. (427 aa)
dhx30DEAH (Asp-Glu-Ala-His) box helicase 30. (1132 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (208 aa)
prpf38aPre-mRNA processing factor 38A. (295 aa)
fam50aFamily with sequence similarity 50 member A. (353 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (945 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
GPR149G protein-coupled receptor 149. (745 aa)
LOC105939412Uncharacterized protein. (220 aa)
ENSFHEP00000031931Si:zfos-375h5.1. (186 aa)
ddx59DEAD (Asp-Glu-Ala-Asp) box polypeptide 59. (574 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (774 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (259 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (137 aa)
cunh9orf78Zgc:103692. (293 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (273 aa)
TCERG1Transcription elongation regulator 1. (890 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (485 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
sf3b2Splicing factor 3b, subunit 2. (855 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1054 aa)
gpkowG patch domain and KOW motifs. (516 aa)
dhx29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1389 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (968 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
SNIP1Smad nuclear interacting protein 1. (364 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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