6 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105920198	Uncharacterized protein. (231 aa)
	tbc1d1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1397 aa)
	tbc1d4	TBC1 domain family, member 4. (1250 aa)
	RAB14	RAB14, member RAS oncogene family. (197 aa)
	LOC105939908	Uncharacterized protein. (229 aa)
	LOC105916639	Uncharacterized protein. (215 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105916639	LOC105920198	ENSFHEP00000025069	ENSFHEP00000006113	Uncharacterized protein.	Uncharacterized protein.	0.519
LOC105916639	LOC105939908	ENSFHEP00000025069	ENSFHEP00000017789	Uncharacterized protein.	Uncharacterized protein.	0.515
LOC105916639	tbc1d1	ENSFHEP00000025069	ENSFHEP00000008050	Uncharacterized protein.	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	0.778
LOC105916639	tbc1d4	ENSFHEP00000025069	ENSFHEP00000009778	Uncharacterized protein.	TBC1 domain family, member 4.	0.778
LOC105920198	LOC105916639	ENSFHEP00000006113	ENSFHEP00000025069	Uncharacterized protein.	Uncharacterized protein.	0.519
LOC105920198	RAB14	ENSFHEP00000006113	ENSFHEP00000016743	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.526
LOC105939908	LOC105916639	ENSFHEP00000017789	ENSFHEP00000025069	Uncharacterized protein.	Uncharacterized protein.	0.515
LOC105939908	RAB14	ENSFHEP00000017789	ENSFHEP00000016743	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.521
RAB14	LOC105920198	ENSFHEP00000016743	ENSFHEP00000006113	RAB14, member RAS oncogene family.	Uncharacterized protein.	0.526
RAB14	LOC105939908	ENSFHEP00000016743	ENSFHEP00000017789	RAB14, member RAS oncogene family.	Uncharacterized protein.	0.521
RAB14	tbc1d1	ENSFHEP00000016743	ENSFHEP00000008050	RAB14, member RAS oncogene family.	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	0.778
RAB14	tbc1d4	ENSFHEP00000016743	ENSFHEP00000009778	RAB14, member RAS oncogene family.	TBC1 domain family, member 4.	0.778
tbc1d1	LOC105916639	ENSFHEP00000008050	ENSFHEP00000025069	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	Uncharacterized protein.	0.778
tbc1d1	RAB14	ENSFHEP00000008050	ENSFHEP00000016743	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.	RAB14, member RAS oncogene family.	0.778
tbc1d4	LOC105916639	ENSFHEP00000009778	ENSFHEP00000025069	TBC1 domain family, member 4.	Uncharacterized protein.	0.778
tbc1d4	RAB14	ENSFHEP00000009778	ENSFHEP00000016743	TBC1 domain family, member 4.	RAB14, member RAS oncogene family.	0.778