(27 nodes) Mixed, incl. T-box superfamily, and Mesogenin/MesP network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105929484	Mesogenin 1. (144 aa)
	ENSFHEP00000001600	One cut domain family member. (458 aa)
	LOC105927767	LIM/homeobox protein Lhx1. (415 aa)
	LOC105926723	Forkhead box H1. (500 aa)
	eomes	Eomesodermin homolog b. (599 aa)
	LOC105933915	T-box transcription factor Ta. (421 aa)
	ENSFHEP00000007186	Homeobox domain-containing protein. (77 aa)
	LOC105932834	Empty spiracles homeobox 1. (232 aa)
	bsx	Brain-specific homeobox. (225 aa)
	LOC105936654	Empty spiracles homeobox 3. (245 aa)
	LOC105915376	T-box transcription factor 16. (453 aa)
	LOC105930975	Uncharacterized protein. (387 aa)
	nkx2-4	NK2 homeobox 4b. (328 aa)
	ENSFHEP00000012777	T-box transcription factor 6. (542 aa)
	vax2	Ventral anterior homeobox 2. (304 aa)
	ripply2	Ripply transcriptional repressor 2. (121 aa)
	mixl1	Homeobox domain-containing protein. (318 aa)
	tbxt	T-box transcription factor Tb. (436 aa)
	LOC105922734	Uncharacterized protein. (339 aa)
	ENSFHEP00000025837	Notochord homeobox. (220 aa)
	ENSFHEP00000027197	Mesoderm posterior aa. (202 aa)
	zic5	Zic family member 5 (odd-paired homolog, Drosophila). (496 aa)
	zic3	Zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila). (445 aa)
	LOC105916893	Eomesodermin homolog a. (645 aa)
	tbx3	T-box transcription factor 3a. (764 aa)
	emx2	Empty spiracles homeobox 2. (247 aa)
	fezf1	FEZ family zinc finger 1. (433 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000007186	LOC105922734	ENSFHEP00000007186	ENSFHEP00000025675	Homeobox domain-containing protein.	Uncharacterized protein.	0.571
ENSFHEP00000007186	LOC105933915	ENSFHEP00000007186	ENSFHEP00000004260	Homeobox domain-containing protein.	T-box transcription factor Ta.	0.694
ENSFHEP00000007186	bsx	ENSFHEP00000007186	ENSFHEP00000009626	Homeobox domain-containing protein.	Brain-specific homeobox.	0.673
ENSFHEP00000007186	tbxt	ENSFHEP00000007186	ENSFHEP00000024361	Homeobox domain-containing protein.	T-box transcription factor Tb.	0.571
ENSFHEP00000012777	ENSFHEP00000027197	ENSFHEP00000012777	ENSFHEP00000027197	T-box transcription factor 6.	Mesoderm posterior aa.	0.696
ENSFHEP00000012777	LOC105929484	ENSFHEP00000012777	ENSFHEP00000000152	T-box transcription factor 6.	Mesogenin 1.	0.779
ENSFHEP00000025837	LOC105922734	ENSFHEP00000025837	ENSFHEP00000025675	Notochord homeobox.	Uncharacterized protein.	0.571
ENSFHEP00000025837	LOC105933915	ENSFHEP00000025837	ENSFHEP00000004260	Notochord homeobox.	T-box transcription factor Ta.	0.694
ENSFHEP00000025837	bsx	ENSFHEP00000025837	ENSFHEP00000009626	Notochord homeobox.	Brain-specific homeobox.	0.673
ENSFHEP00000025837	tbxt	ENSFHEP00000025837	ENSFHEP00000024361	Notochord homeobox.	T-box transcription factor Tb.	0.571
ENSFHEP00000027197	ENSFHEP00000012777	ENSFHEP00000027197	ENSFHEP00000012777	Mesoderm posterior aa.	T-box transcription factor 6.	0.696
ENSFHEP00000027197	LOC105915376	ENSFHEP00000027197	ENSFHEP00000009880	Mesoderm posterior aa.	T-box transcription factor 16.	0.630
ENSFHEP00000027197	LOC105930975	ENSFHEP00000027197	ENSFHEP00000010017	Mesoderm posterior aa.	Uncharacterized protein.	0.630
ENSFHEP00000027197	ripply2	ENSFHEP00000027197	ENSFHEP00000019040	Mesoderm posterior aa.	Ripply transcriptional repressor 2.	0.562
LOC105915376	ENSFHEP00000027197	ENSFHEP00000009880	ENSFHEP00000027197	T-box transcription factor 16.	Mesoderm posterior aa.	0.630
LOC105915376	LOC105929484	ENSFHEP00000009880	ENSFHEP00000000152	T-box transcription factor 16.	Mesogenin 1.	0.733
LOC105915376	LOC105933915	ENSFHEP00000009880	ENSFHEP00000004260	T-box transcription factor 16.	T-box transcription factor Ta.	0.437
LOC105916893	LOC105922734	ENSFHEP00000031101	ENSFHEP00000025675	Eomesodermin homolog a.	Uncharacterized protein.	0.614
LOC105916893	LOC105926723	ENSFHEP00000031101	ENSFHEP00000003236	Eomesodermin homolog a.	Forkhead box H1.	0.643
LOC105916893	LOC105933915	ENSFHEP00000031101	ENSFHEP00000004260	Eomesodermin homolog a.	T-box transcription factor Ta.	0.618