(5 nodes) Mesogenin/MesP, and Somatic motor neuron differentiation network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105929484	Mesogenin 1. (144 aa)
	LOC105915376	T-box transcription factor 16. (453 aa)
	ENSFHEP00000012777	T-box transcription factor 6. (542 aa)
	ripply2	Ripply transcriptional repressor 2. (121 aa)
	ENSFHEP00000027197	Mesoderm posterior aa. (202 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000012777	ENSFHEP00000027197	ENSFHEP00000012777	ENSFHEP00000027197	T-box transcription factor 6.	Mesoderm posterior aa.	0.696
ENSFHEP00000012777	LOC105929484	ENSFHEP00000012777	ENSFHEP00000000152	T-box transcription factor 6.	Mesogenin 1.	0.779
ENSFHEP00000027197	ENSFHEP00000012777	ENSFHEP00000027197	ENSFHEP00000012777	Mesoderm posterior aa.	T-box transcription factor 6.	0.696
ENSFHEP00000027197	LOC105915376	ENSFHEP00000027197	ENSFHEP00000009880	Mesoderm posterior aa.	T-box transcription factor 16.	0.630
ENSFHEP00000027197	ripply2	ENSFHEP00000027197	ENSFHEP00000019040	Mesoderm posterior aa.	Ripply transcriptional repressor 2.	0.562
LOC105915376	ENSFHEP00000027197	ENSFHEP00000009880	ENSFHEP00000027197	T-box transcription factor 16.	Mesoderm posterior aa.	0.630
LOC105915376	LOC105929484	ENSFHEP00000009880	ENSFHEP00000000152	T-box transcription factor 16.	Mesogenin 1.	0.733
LOC105929484	ENSFHEP00000012777	ENSFHEP00000000152	ENSFHEP00000012777	Mesogenin 1.	T-box transcription factor 6.	0.779
LOC105929484	LOC105915376	ENSFHEP00000000152	ENSFHEP00000009880	Mesogenin 1.	T-box transcription factor 16.	0.733
ripply2	ENSFHEP00000027197	ENSFHEP00000019040	ENSFHEP00000027197	Ripply transcriptional repressor 2.	Mesoderm posterior aa.	0.562