(15 nodes) Cohesin Loading onto Chromatin network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	smc1a	Structural maintenance of chromosomes protein. (1211 aa)
	LOC105931280	Stromal antigen 2b. (1313 aa)
	rad21	RAD21 cohesin complex component a. (639 aa)
	pds5a	PDS5 cohesin associated factor A. (1287 aa)
	smc3	Structural maintenance of chromosomes 3. (1155 aa)
	RBM20	RNA binding motif protein 20. (1124 aa)
	ENSFHEP00000014677	Uncharacterized protein. (104 aa)
	stag1	Stromal antigen 1a. (1260 aa)
	LOC105920348	WAPL cohesin release factor b. (1225 aa)
	LOC105928480	Structural maintenance of chromosomes protein. (1253 aa)
	pds5b	PDS5 cohesin associated factor B. (1345 aa)
	LOC105931684	RAD21 cohesin complex component b. (592 aa)
	LOC105927529	Si:ch211-269e2.1. (1110 aa)
	LOC105939942	Nipped-B protein. (2440 aa)
	LOC105935255	RAD21 cohesin complex component like 1. (544 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000014677	LOC105920348	ENSFHEP00000014677	ENSFHEP00000016073	Uncharacterized protein.	WAPL cohesin release factor b.	0.790
ENSFHEP00000014677	LOC105927529	ENSFHEP00000014677	ENSFHEP00000026924	Uncharacterized protein.	Si:ch211-269e2.1.	0.879
ENSFHEP00000014677	LOC105928480	ENSFHEP00000014677	ENSFHEP00000017975	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.940
ENSFHEP00000014677	LOC105931280	ENSFHEP00000014677	ENSFHEP00000001265	Uncharacterized protein.	Stromal antigen 2b.	0.879
ENSFHEP00000014677	LOC105931684	ENSFHEP00000014677	ENSFHEP00000025985	Uncharacterized protein.	RAD21 cohesin complex component b.	0.888
ENSFHEP00000014677	LOC105935255	ENSFHEP00000014677	ENSFHEP00000034985	Uncharacterized protein.	RAD21 cohesin complex component like 1.	0.888
ENSFHEP00000014677	LOC105939942	ENSFHEP00000014677	ENSFHEP00000030843	Uncharacterized protein.	Nipped-B protein.	0.900
ENSFHEP00000014677	RBM20	ENSFHEP00000014677	ENSFHEP00000011562	Uncharacterized protein.	RNA binding motif protein 20.	0.947
ENSFHEP00000014677	pds5a	ENSFHEP00000014677	ENSFHEP00000007409	Uncharacterized protein.	PDS5 cohesin associated factor A.	0.898
ENSFHEP00000014677	pds5b	ENSFHEP00000014677	ENSFHEP00000021489	Uncharacterized protein.	PDS5 cohesin associated factor B.	0.898
ENSFHEP00000014677	rad21	ENSFHEP00000014677	ENSFHEP00000003337	Uncharacterized protein.	RAD21 cohesin complex component a.	0.888
ENSFHEP00000014677	smc1a	ENSFHEP00000014677	ENSFHEP00000000043	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.940
ENSFHEP00000014677	smc3	ENSFHEP00000014677	ENSFHEP00000011475	Uncharacterized protein.	Structural maintenance of chromosomes 3.	0.979
ENSFHEP00000014677	stag1	ENSFHEP00000014677	ENSFHEP00000015913	Uncharacterized protein.	Stromal antigen 1a.	0.879
LOC105920348	ENSFHEP00000014677	ENSFHEP00000016073	ENSFHEP00000014677	WAPL cohesin release factor b.	Uncharacterized protein.	0.790
LOC105920348	LOC105927529	ENSFHEP00000016073	ENSFHEP00000026924	WAPL cohesin release factor b.	Si:ch211-269e2.1.	0.808
LOC105920348	LOC105928480	ENSFHEP00000016073	ENSFHEP00000017975	WAPL cohesin release factor b.	Structural maintenance of chromosomes protein.	0.858
LOC105920348	LOC105931280	ENSFHEP00000016073	ENSFHEP00000001265	WAPL cohesin release factor b.	Stromal antigen 2b.	0.808
LOC105920348	LOC105931684	ENSFHEP00000016073	ENSFHEP00000025985	WAPL cohesin release factor b.	RAD21 cohesin complex component b.	0.844
LOC105920348	LOC105935255	ENSFHEP00000016073	ENSFHEP00000034985	WAPL cohesin release factor b.	RAD21 cohesin complex component like 1.	0.844