(28 nodes) Laminin interactions, and Synaptic vesicle protein SV2 network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFHEP00000001273	Laminin N-terminal domain-containing protein. (304 aa)
	lamc3	Laminin, gamma 3. (1168 aa)
	itga3	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (1059 aa)
	ENSFHEP00000006203	Uncharacterized protein. (314 aa)
	ENSFHEP00000006232	Uncharacterized protein. (509 aa)
	lamb3	Uncharacterized protein. (1124 aa)
	LOC105937872	Laminin, beta 2 (laminin S). (1803 aa)
	ITGA7	Integrin subunit alpha 7; Belongs to the integrin alpha chain family. (1091 aa)
	ENSFHEP00000014141	Laminin N-terminal domain-containing protein. (251 aa)
	ENSFHEP00000014594	Uncharacterized protein. (535 aa)
	itgb4	Integrin beta. (1916 aa)
	LOC105934212	Integrin, alpha 6b; Belongs to the integrin alpha chain family. (1001 aa)
	itgb1	Integrin beta; Belongs to the integrin beta chain family. (810 aa)
	lamb1	Laminin, beta 1a. (1758 aa)
	ENSFHEP00000018337	Uncharacterized protein. (894 aa)
	ENSFHEP00000018493	Laminin_I domain-containing protein. (117 aa)
	LOC105922845	Uncharacterized protein. (892 aa)
	itga1	Integrin, alpha 1; Belongs to the integrin alpha chain family. (1177 aa)
	LOC105933976	Laminin, beta 1b. (1718 aa)
	ITGA6	Integrin subunit alpha 6; Belongs to the integrin alpha chain family. (941 aa)
	SV2C	Synaptic vesicle glycoprotein 2C. (497 aa)
	LOC105925435	Synaptic vesicle glycoprotein 2Ca. (734 aa)
	lama4	Laminin, alpha 4. (1874 aa)
	lamc1	Laminin, gamma 1. (1014 aa)
	ENSFHEP00000027483	Uncharacterized protein. (146 aa)
	ENSFHEP00000030467	Laminin, alpha 5. (1622 aa)
	ENSFHEP00000030650	Uncharacterized protein. (1028 aa)
	ENSFHEP00000033323	Uncharacterized protein. (890 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000001273	ENSFHEP00000006203	ENSFHEP00000001273	ENSFHEP00000006203	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.714
ENSFHEP00000001273	ENSFHEP00000006232	ENSFHEP00000001273	ENSFHEP00000006232	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.616
ENSFHEP00000001273	ENSFHEP00000014141	ENSFHEP00000001273	ENSFHEP00000014141	Laminin N-terminal domain-containing protein.	Laminin N-terminal domain-containing protein.	0.471
ENSFHEP00000001273	ENSFHEP00000014594	ENSFHEP00000001273	ENSFHEP00000014594	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.776
ENSFHEP00000001273	ENSFHEP00000018337	ENSFHEP00000001273	ENSFHEP00000018337	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.773
ENSFHEP00000001273	ENSFHEP00000018493	ENSFHEP00000001273	ENSFHEP00000018493	Laminin N-terminal domain-containing protein.	Laminin_I domain-containing protein.	0.773
ENSFHEP00000001273	ENSFHEP00000027483	ENSFHEP00000001273	ENSFHEP00000027483	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.943
ENSFHEP00000001273	ENSFHEP00000030467	ENSFHEP00000001273	ENSFHEP00000030467	Laminin N-terminal domain-containing protein.	Laminin, alpha 5.	0.776
ENSFHEP00000001273	ENSFHEP00000030650	ENSFHEP00000001273	ENSFHEP00000030650	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.776
ENSFHEP00000001273	ENSFHEP00000033323	ENSFHEP00000001273	ENSFHEP00000033323	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.836
ENSFHEP00000001273	ITGA6	ENSFHEP00000001273	ENSFHEP00000023074	Laminin N-terminal domain-containing protein.	Integrin subunit alpha 6; Belongs to the integrin alpha chain family.	0.820
ENSFHEP00000001273	ITGA7	ENSFHEP00000001273	ENSFHEP00000014043	Laminin N-terminal domain-containing protein.	Integrin subunit alpha 7; Belongs to the integrin alpha chain family.	0.647
ENSFHEP00000001273	LOC105922845	ENSFHEP00000001273	ENSFHEP00000020054	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.851
ENSFHEP00000001273	LOC105925435	ENSFHEP00000001273	ENSFHEP00000024845	Laminin N-terminal domain-containing protein.	Synaptic vesicle glycoprotein 2Ca.	0.742
ENSFHEP00000001273	LOC105933976	ENSFHEP00000001273	ENSFHEP00000022550	Laminin N-terminal domain-containing protein.	Laminin, beta 1b.	0.922
ENSFHEP00000001273	LOC105934212	ENSFHEP00000001273	ENSFHEP00000017348	Laminin N-terminal domain-containing protein.	Integrin, alpha 6b; Belongs to the integrin alpha chain family.	0.820
ENSFHEP00000001273	LOC105937872	ENSFHEP00000001273	ENSFHEP00000012202	Laminin N-terminal domain-containing protein.	Laminin, beta 2 (laminin S).	0.865
ENSFHEP00000001273	SV2C	ENSFHEP00000001273	ENSFHEP00000024422	Laminin N-terminal domain-containing protein.	Synaptic vesicle glycoprotein 2C.	0.736
ENSFHEP00000001273	itga1	ENSFHEP00000001273	ENSFHEP00000020750	Laminin N-terminal domain-containing protein.	Integrin, alpha 1; Belongs to the integrin alpha chain family.	0.580
ENSFHEP00000001273	itga3	ENSFHEP00000001273	ENSFHEP00000005535	Laminin N-terminal domain-containing protein.	Integrin, alpha 3b; Belongs to the integrin alpha chain family.	0.619