(11 nodes) mRNA regulatory element binding translation repressor activity network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105916055	SHMT domain-containing protein. (483 aa)
	cpeb2	Cytoplasmic polyadenylation element binding protein 2. (756 aa)
	ENSFHEP00000030739	SHMT domain-containing protein. (88 aa)
	cpeb1	Cytoplasmic polyadenylation element binding protein 1b. (577 aa)
	LOC105931004	Cytoplasmic polyadenylation element binding protein 4a. (740 aa)
	LOC105916057	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (483 aa)
	ENSFHEP00000015728	SHMT domain-containing protein. (48 aa)
	shmt1	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (512 aa)
	cpeb3	Cytoplasmic polyadenylation element binding protein 3. (686 aa)
	ENSFHEP00000021849	SHMT domain-containing protein. (169 aa)
	CPEB4	Cytoplasmic polyadenylation element binding protein 4. (698 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPEB4	cpeb1	ENSFHEP00000027302	ENSFHEP00000029843	Cytoplasmic polyadenylation element binding protein 4.	Cytoplasmic polyadenylation element binding protein 1b.	0.802
CPEB4	cpeb2	ENSFHEP00000027302	ENSFHEP00000028771	Cytoplasmic polyadenylation element binding protein 4.	Cytoplasmic polyadenylation element binding protein 2.	0.810
ENSFHEP00000021849	LOC105916055	ENSFHEP00000021849	ENSFHEP00000027456	SHMT domain-containing protein.	SHMT domain-containing protein.	0.902
ENSFHEP00000021849	LOC105916057	ENSFHEP00000021849	ENSFHEP00000009641	SHMT domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.902
ENSFHEP00000021849	shmt1	ENSFHEP00000021849	ENSFHEP00000019297	SHMT domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
LOC105916055	ENSFHEP00000021849	ENSFHEP00000027456	ENSFHEP00000021849	SHMT domain-containing protein.	SHMT domain-containing protein.	0.902
LOC105916057	ENSFHEP00000021849	ENSFHEP00000009641	ENSFHEP00000021849	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	SHMT domain-containing protein.	0.902
LOC105931004	cpeb1	ENSFHEP00000006431	ENSFHEP00000029843	Cytoplasmic polyadenylation element binding protein 4a.	Cytoplasmic polyadenylation element binding protein 1b.	0.765
cpeb1	CPEB4	ENSFHEP00000029843	ENSFHEP00000027302	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 4.	0.802
cpeb1	LOC105931004	ENSFHEP00000029843	ENSFHEP00000006431	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 4a.	0.765
cpeb1	cpeb2	ENSFHEP00000029843	ENSFHEP00000028771	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 2.	0.823
cpeb1	cpeb3	ENSFHEP00000029843	ENSFHEP00000019404	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 3.	0.799
cpeb2	CPEB4	ENSFHEP00000028771	ENSFHEP00000027302	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 4.	0.810
cpeb2	cpeb1	ENSFHEP00000028771	ENSFHEP00000029843	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 1b.	0.823
cpeb2	cpeb3	ENSFHEP00000028771	ENSFHEP00000019404	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 3.	0.814
cpeb3	cpeb1	ENSFHEP00000019404	ENSFHEP00000029843	Cytoplasmic polyadenylation element binding protein 3.	Cytoplasmic polyadenylation element binding protein 1b.	0.799
cpeb3	cpeb2	ENSFHEP00000019404	ENSFHEP00000028771	Cytoplasmic polyadenylation element binding protein 3.	Cytoplasmic polyadenylation element binding protein 2.	0.814
shmt1	ENSFHEP00000021849	ENSFHEP00000019297	ENSFHEP00000021849	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	SHMT domain-containing protein.	0.901