(92 nodes) Large ribosomal subunit network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (165 aa)
	rpl3	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (378 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (113 aa)
	mrpl34	Mitochondrial ribosomal protein L34. (126 aa)
	mrpl14	39S ribosomal protein L14, mitochondrial. (155 aa)
	ndufab1	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (183 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	mrps30	Mitochondrial ribosomal protein S30. (422 aa)
	mrpl45	Mitochondrial ribosomal protein L45. (318 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (235 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (279 aa)
	mrpl13	39S ribosomal protein L13, mitochondrial. (179 aa)
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (342 aa)
	RPL3L	Ribosomal protein L3 like. (329 aa)
	rpl18	Ribosomal protein L18. (190 aa)
	mrpl41	Mitochondrial ribosomal protein L41. (135 aa)
	RPL30	Ribosomal protein L30. (95 aa)
	mrpl52	Mitochondrial ribosomal protein L52. (128 aa)
	mrpl42	Mitochondrial ribosomal protein L42. (145 aa)
	ENSFHEP00000032075	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	nsun4	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (446 aa)
	nsun3	NOP2/Sun RNA methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (454 aa)
	rpl14	Ribosomal protein L14. (137 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	mrpl12	Mitochondrial ribosomal protein L12. (185 aa)
	RPL5-2	Ribosomal protein L5. (299 aa)
	mrpl51	Mitochondrial ribosomal protein L51. (131 aa)
	mrpl53	Mitochondrial ribosomal protein L53. (108 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (320 aa)
	rpl7l1	Ribosomal protein L7-like 1. (251 aa)
	ENSFHEP00000027906	Mitochondrial ribosomal protein L15. (152 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (227 aa)
	mrpl35	Mitochondrial ribosomal protein L35. (174 aa)
	mrps18a	Mitochondrial ribosomal protein S18A. (208 aa)
	ENSFHEP00000025750	Ribosomal_L18e/L15P domain-containing protein. (69 aa)
	LOC105931547	Ribosomal protein L26. (180 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (147 aa)
	mrpl28	Mitochondrial ribosomal protein L28. (252 aa)
	mrpl10	39S ribosomal protein L10, mitochondrial. (252 aa)
	rpl4	Ribosomal protein L4. (368 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (148 aa)
	rpl10a	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	fance	FA complementation group E. (562 aa)
	ENSFHEP00000022745	Mitochondrial ribosomal protein L21. (204 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (183 aa)
	mrpl44	Mitochondrial ribosomal protein L44. (376 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (286 aa)
	rpl35	Ribosomal protein L35. (123 aa)
	mrpl39	Mitochondrial ribosomal protein L39. (366 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	mrpl48	Mitochondrial ribosomal protein L48. (210 aa)
	LOC105918539	Mitochondrial transcription termination factor 4. (345 aa)
	ENSFHEP00000017533	Uncharacterized protein. (130 aa)
	LOC105916325	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (212 aa)
	rpl37a	Ribosomal protein L37a. (92 aa)
	mrpl58	Mitochondrial ribosomal protein L58. (196 aa)
	rpl7	Ribosomal protein L7. (174 aa)
	ENSFHEP00000016354	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	LOC105928015	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	mrpl38	Mitochondrial ribosomal protein L38. (386 aa)
	LOC105925237	Zgc:110130. (287 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	mrpl22	39S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family. (209 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	mrpl16	Mitochondrial ribosomal protein L16. (263 aa)
	mrpl46	39S ribosomal protein L46, mitochondrial. (293 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	mrpl30	Mitochondrial ribosomal protein L30. (188 aa)
	LOC105918681	Ribosomal_L18e/L15P domain-containing protein. (135 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (174 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	RPL5	Ribosomal protein L5b. (292 aa)
	LOC105918212	Mitochondrial ribosomal protein L23. (205 aa)
	mrpl43	Mitochondrial ribosomal protein L43. (158 aa)
	mrpl24	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (265 aa)
	mrpl9	Mitochondrial ribosomal protein L9. (289 aa)
	rpl8	Ribosomal protein L8. (257 aa)
	mrpl33	Mitochondrial ribosomal protein L33. (63 aa)
	rpl6	Ribosomal protein L6. (259 aa)
	rpl38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	mrpl55	Zgc:171480. (139 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (244 aa)
	rpl28	Ribosomal protein L28. (169 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (92 aa)
	mrpl47	39S ribosomal protein L47, mitochondrial. (267 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000016354	ENSFHEP00000017533	ENSFHEP00000016354	ENSFHEP00000017533	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.919
ENSFHEP00000016354	ENSFHEP00000022745	ENSFHEP00000016354	ENSFHEP00000022745	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L21.	0.999
ENSFHEP00000016354	ENSFHEP00000027906	ENSFHEP00000016354	ENSFHEP00000027906	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L15.	0.999
ENSFHEP00000016354	LOC105918212	ENSFHEP00000016354	ENSFHEP00000009722	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L23.	0.994
ENSFHEP00000016354	LOC105918539	ENSFHEP00000016354	ENSFHEP00000018260	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial transcription termination factor 4.	0.714
ENSFHEP00000016354	LOC105918681	ENSFHEP00000016354	ENSFHEP00000010688	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal_L18e/L15P domain-containing protein.	0.991
ENSFHEP00000016354	LOC105925237	ENSFHEP00000016354	ENSFHEP00000015696	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Zgc:110130.	0.941
ENSFHEP00000016354	LOC105931547	ENSFHEP00000016354	ENSFHEP00000025276	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L26.	0.997
ENSFHEP00000016354	MRPL49	ENSFHEP00000016354	ENSFHEP00000010310	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L49.	0.997
ENSFHEP00000016354	RPL27A	ENSFHEP00000016354	ENSFHEP00000018303	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.991
ENSFHEP00000016354	RPL30	ENSFHEP00000016354	ENSFHEP00000032905	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L30.	0.428
ENSFHEP00000016354	RPL3L	ENSFHEP00000016354	ENSFHEP00000034853	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L3 like.	0.991
ENSFHEP00000016354	RPL5	ENSFHEP00000016354	ENSFHEP00000009956	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L5b.	0.997
ENSFHEP00000016354	RPL5-2	ENSFHEP00000016354	ENSFHEP00000029570	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L5.	0.997
ENSFHEP00000016354	fance	ENSFHEP00000016354	ENSFHEP00000023492	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	FA complementation group E.	0.990
ENSFHEP00000016354	mrpl1	ENSFHEP00000016354	ENSFHEP00000028330	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L1.	0.993
ENSFHEP00000016354	mrpl10	ENSFHEP00000016354	ENSFHEP00000024377	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	39S ribosomal protein L10, mitochondrial.	0.957
ENSFHEP00000016354	mrpl11	ENSFHEP00000016354	ENSFHEP00000013983	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSFHEP00000016354	mrpl12	ENSFHEP00000016354	ENSFHEP00000029677	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L12.	0.999
ENSFHEP00000016354	mrpl13	ENSFHEP00000016354	ENSFHEP00000001151	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	39S ribosomal protein L13, mitochondrial.	0.999