STRINGSTRING
cnot10 cnot10 zc3h12a zc3h12a LOC105921986 LOC105921986 eprs1 eprs1 LOC105940305 LOC105940305 LOC105934107 LOC105934107 cnot11 cnot11 mrpl13 mrpl13 EIF4EBP3 EIF4EBP3 ybx1 ybx1 ENSFHEP00000001529 ENSFHEP00000001529 ENSFHEP00000001551 ENSFHEP00000001551 YTHDF1 YTHDF1 LOC105933034 LOC105933034 ENSFHEP00000002889 ENSFHEP00000002889 ENSFHEP00000002902 ENSFHEP00000002902 samd4b samd4b LOC105933566 LOC105933566 rpl13a rpl13a caprin2 caprin2 ENSFHEP00000003892 ENSFHEP00000003892 noct noct ythdf2 ythdf2 LOC105931004 LOC105931004 eif2ak3 eif2ak3 exosc3 exosc3 ENSFHEP00000007488 ENSFHEP00000007488 LOC105919467 LOC105919467 lsm1 lsm1 exosc7 exosc7 mettl14 mettl14 LOC105916057 LOC105916057 LOC105930986 LOC105930986 srp9 srp9 LOC105930982 LOC105930982 cnot6l cnot6l hnrnpr hnrnpr LOC105930455 LOC105930455 LOC105929878 LOC105929878 LOC105938942 LOC105938942 ENSFHEP00000011888 ENSFHEP00000011888 LOC105930366 LOC105930366 LOC105920488 LOC105920488 LOC105920487 LOC105920487 zar1 zar1 tpr tpr EIF4ENIF1 EIF4ENIF1 LOC105927446 LOC105927446 LOC105916922 LOC105916922 malsu1 malsu1 ENSFHEP00000014088 ENSFHEP00000014088 LOC105929201 LOC105929201 MARF1 MARF1 LOC105934289 LOC105934289 LOC105916919 LOC105916919 LOC105921610 LOC105921610 EIF4EBP1 EIF4EBP1 dicer1 dicer1 trim71 trim71 ENSFHEP00000015443 ENSFHEP00000015443 mettl3 mettl3 ENSFHEP00000015614 ENSFHEP00000015614 ENSFHEP00000015621 ENSFHEP00000015621 LOC105922967 LOC105922967 ENSFHEP00000015728 ENSFHEP00000015728 dhx36 dhx36 LOC105918082 LOC105918082 ENSFHEP00000016200 ENSFHEP00000016200 LOC105934874 LOC105934874 pde12 pde12 mlh1 mlh1 rida rida LOC105917395 LOC105917395 LOC105928570 LOC105928570 dcp1b dcp1b LOC105916283 LOC105916283 zfp36l2 zfp36l2 LOC105931936 LOC105931936 lrrc27 lrrc27 ENSFHEP00000019103 ENSFHEP00000019103 shmt1 shmt1 cpeb3 cpeb3 ENSFHEP00000019438 ENSFHEP00000019438 exosc5 exosc5 fmr1 fmr1 LOC105926651 LOC105926651 ENSFHEP00000020686 ENSFHEP00000020686 LOC105925550 LOC105925550 cnot9 cnot9 zfp36l1 zfp36l1 exosc8 exosc8 ENSFHEP00000021849 ENSFHEP00000021849 ENSFHEP00000022134 ENSFHEP00000022134 eif2s1 eif2s1 tnrc6a tnrc6a ENSFHEP00000023623 ENSFHEP00000023623 LOC105938041 LOC105938041 mov10 mov10 ENSFHEP00000024146 ENSFHEP00000024146 pan2 pan2 fto fto PNPT1 PNPT1 LOC105916116 LOC105916116 caprin1 caprin1 samd4a samd4a LOC105917730 LOC105917730 LOC105916085 LOC105916085 dcp2 dcp2 CPEB4 CPEB4 LOC105916055 LOC105916055 LOC105934408 LOC105934408 rc3h2 rc3h2 rnf139 rnf139 NANOS2 NANOS2 cpeb2 cpeb2 parn parn LOC105916727 LOC105916727 LOC105931483 LOC105931483 EIF2AK4 EIF2AK4 cpeb1 cpeb1 ENSFHEP00000030739 ENSFHEP00000030739 cnot8 cnot8 ENSFHEP00000030876 ENSFHEP00000030876 pan3 pan3 LOC105928051 LOC105928051 pus7 pus7 exosc2 exosc2 rc3h1 rc3h1 eif2ak1 eif2ak1 LOC105929715 LOC105929715 dis3l2 dis3l2 cnot1 cnot1 ddx6 ddx6 ENSFHEP00000033951 ENSFHEP00000033951 ENSFHEP00000034172 ENSFHEP00000034172 LOC105919714 LOC105919714 dcps dcps LOC105933072 LOC105933072 dcp1a dcp1a cnot3 cnot3 LOC105935276 LOC105935276
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cnot10CCR4-NOT transcription complex, subunit 10. (743 aa)
zc3h12aZinc finger CCCH-type containing 12A. (618 aa)
LOC105921986Si:dkey-206d17.12. (588 aa)
eprs1Glutamyl-prolyl-tRNA synthetase. (1658 aa)
LOC105940305Translocated promoter region a, nuclear basket protein. (2150 aa)
LOC105934107CCR4-NOT transcription complex, subunit 3b. (931 aa)
cnot11CCR4-NOT transcription complex, subunit 11. (444 aa)
mrpl1339S ribosomal protein L13, mitochondrial. (179 aa)
EIF4EBP3Eukaryotic translation initiation factor 4E binding protein 3, like. (114 aa)
ybx1Y box binding protein 1. (303 aa)
ENSFHEP00000001529Uncharacterized protein. (660 aa)
ENSFHEP00000001551Uncharacterized protein. (149 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (618 aa)
LOC105933034Trinucleotide repeat containing adaptor 6C1. (1877 aa)
ENSFHEP00000002889Fragile X mental retardation, autosomal homolog 1. (259 aa)
ENSFHEP00000002902Uncharacterized protein. (185 aa)
samd4bSterile alpha motif domain containing 4B. (671 aa)
LOC105933566Trinucleotide repeat containing adaptor 6C2. (1734 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
caprin2Caprin family member 2. (894 aa)
ENSFHEP00000003892Uncharacterized protein. (125 aa)
noctNocturnin. (460 aa)
ythdf2YTH N(6)-methyladenosine RNA binding protein 2. (660 aa)
LOC105931004Cytoplasmic polyadenylation element binding protein 4a. (740 aa)
eif2ak3Eukaryotic translation initiation factor 2-alpha kinase 3. (1136 aa)
exosc3Exosome component 3. (301 aa)
ENSFHEP00000007488RPOL4c domain-containing protein. (106 aa)
LOC105919467TSC complex subunit 1. (1034 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
exosc7Exosome component 7. (291 aa)
mettl14N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family. (455 aa)
LOC105916057Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (483 aa)
LOC105930986AAA domain-containing protein. (898 aa)
srp9Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (86 aa)
LOC105930982Eukaryotic translation initiation factor 4E binding protein 1. (121 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (549 aa)
hnrnprHeterogeneous nuclear ribonucleoprotein R. (620 aa)
LOC105930455NOT2_3_5 domain-containing protein. (528 aa)
LOC105929878Synaptotagmin binding, cytoplasmic RNA interacting protein, like. (585 aa)
LOC105938942Insulin-like growth factor binding protein 5a. (267 aa)
ENSFHEP00000011888RNase_PH domain-containing protein. (115 aa)
LOC105930366RNA binding motif protein 24a. (234 aa)
LOC105920488Zgc:162730. (417 aa)
LOC105920487Zgc:114130. (428 aa)
zar1Zygote arrest 1. (335 aa)
tprTranslocated promoter region b, nuclear basket protein. (1513 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (953 aa)
LOC105927446TSC complex subunit 1b. (1254 aa)
LOC105916922Uncharacterized protein; Belongs to the DEAD box helicase family. (482 aa)
malsu1Si:zfos-1192g2.3. (240 aa)
ENSFHEP00000014088RNA binding motif protein 24b. (215 aa)
LOC105929201CCR4-NOT transcription complex, subunit 7. (304 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1432 aa)
LOC105934289Argonaute RISC catalytic component 2; Belongs to the argonaute family. (837 aa)
LOC105916919Uncharacterized protein; Belongs to the argonaute family. (864 aa)
LOC105921610YTH N(6)-methyladenosine RNA binding protein 3. (603 aa)
EIF4EBP1Eukaryotic translation initiation factor 4E binding protein 1. (125 aa)
dicer1Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1793 aa)
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (830 aa)
ENSFHEP00000015443Nanos-type domain-containing protein; Belongs to the nanos family. (179 aa)
mettl3Methyltransferase like 3; Belongs to the MT-A70-like family. (578 aa)
ENSFHEP00000015614XRN_N domain-containing protein. (103 aa)
ENSFHEP00000015621Uncharacterized protein. (457 aa)
LOC105922967Insulin-like growth factor binding protein 5a. (249 aa)
ENSFHEP00000015728SHMT domain-containing protein. (48 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1013 aa)
LOC105918082PAT1 homolog 1, processing body mRNA decay factor. (800 aa)
ENSFHEP00000016200DUF1785 domain-containing protein. (252 aa)
LOC105934874Argonaute RISC component 1; Belongs to the argonaute family. (831 aa)
pde12Phosphodiesterase 12. (630 aa)
mlh1MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (715 aa)
ridaReactive intermediate imine deaminase A homolog. (171 aa)
LOC105917395Argonaute RISC component 4; Belongs to the argonaute family. (783 aa)
LOC105928570Reactive intermediate imine deaminase A homolog. (135 aa)
dcp1bDecapping mRNA 1B. (636 aa)
LOC105916283Cell cycle associated protein 1a. (648 aa)
zfp36l2Zinc finger protein 36, C3H type-like 2. (417 aa)
LOC105931936Nanos homolog 1; Belongs to the nanos family. (231 aa)
lrrc27Leucine-rich repeat-containing protein 27. (411 aa)
ENSFHEP00000019103Piwi domain-containing protein. (220 aa)
shmt1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (512 aa)
cpeb3Cytoplasmic polyadenylation element binding protein 3. (686 aa)
ENSFHEP00000019438Uncharacterized protein. (428 aa)
exosc5Exosome component 5. (236 aa)
fmr1Fragile X mental retardation 1. (604 aa)
LOC105926651TNRC6-PABC_bdg domain-containing protein. (2065 aa)
ENSFHEP00000020686DRBM domain-containing protein. (159 aa)
LOC105925550Fragile X mental retardation, autosomal homolog 2. (669 aa)
cnot9CCR4-NOT transcription complex subunit 9. (268 aa)
zfp36l1Zinc finger protein 36, C3H type-like 1a. (366 aa)
exosc8Exosome component 8. (277 aa)
ENSFHEP00000021849SHMT domain-containing protein. (169 aa)
ENSFHEP00000022134Uncharacterized protein. (156 aa)
eif2s1Eukaryotic translation initiation factor 2, subunit 1 alpha b. (315 aa)
tnrc6aTrinucleotide repeat containing adaptor 6A. (1650 aa)
ENSFHEP00000023623Uncharacterized protein. (708 aa)
LOC105938041Trinucleotide repeat-containing gene 6B protein. (2020 aa)
mov10Uncharacterized protein. (1011 aa)
ENSFHEP00000024146Nanos-type domain-containing protein; Belongs to the nanos family. (231 aa)
pan2Poly(A) specific ribonuclease subunit PAN2. (1130 aa)
ftoFTO alpha-ketoglutarate dependent dioxygenase. (651 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (770 aa)
LOC105916116Pleckstrin homology domain containing, family N member 1. (707 aa)
caprin1Cell cycle associated protein 1b. (687 aa)
samd4aSterile alpha motif domain containing 4A. (726 aa)
LOC105917730CCR4-NOT transcription complex, subunit 2. (528 aa)
LOC105916085PAT1 homolog 2. (495 aa)
dcp2Decapping mRNA 2. (397 aa)
CPEB4Cytoplasmic polyadenylation element binding protein 4. (698 aa)
LOC105916055SHMT domain-containing protein. (483 aa)
LOC105934408Synaptotagmin binding, cytoplasmic RNA interacting protein. (635 aa)
rc3h2Ring finger and CCCH-type domains 2. (1122 aa)
rnf139Ring finger protein 139. (701 aa)
NANOS2Nanos C2HC-type zinc finger 2; Belongs to the nanos family. (156 aa)
cpeb2Cytoplasmic polyadenylation element binding protein 2. (756 aa)
parnPoly(A)-specific ribonuclease (deadenylation nuclease). (639 aa)
LOC105916727CCR4-NOT transcription complex, subunit 6a. (391 aa)
LOC105931483Nocturnin. (387 aa)
EIF2AK4Eukaryotic translation initiation factor 2 alpha kinase 4. (1654 aa)
cpeb1Cytoplasmic polyadenylation element binding protein 1b. (577 aa)
ENSFHEP00000030739SHMT domain-containing protein. (88 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (285 aa)
ENSFHEP00000030876Uncharacterized protein. (142 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (664 aa)
LOC105928051Mov10 RISC complex RNA helicase a. (998 aa)
pus7Pseudouridine synthase 7. (714 aa)
exosc2Exosome component 2. (298 aa)
rc3h1Ring finger and CCCH-type domains 1b. (1168 aa)
eif2ak1Eukaryotic translation initiation factor 2-alpha kinase 1. (663 aa)
LOC105929715LSM14A mRNA processing body assembly factor a. (486 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1071 aa)
cnot1CCR4-NOT transcription complex, subunit 1. (2378 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (482 aa)
ENSFHEP00000033951Uncharacterized protein. (293 aa)
ENSFHEP00000034172Eukaryotic translation initiation factor 4E binding protein 2. (51 aa)
LOC105919714LSM14A mRNA processing body assembly factor b. (440 aa)
dcpsDecapping enzyme, scavenger. (330 aa)
LOC105933072Sb:cb81. (418 aa)
dcp1aDecapping mRNA 1A. (480 aa)
cnot3CCR4-NOT transcription complex, subunit 3a. (887 aa)
LOC105935276YTH N(6)-methyladenosine RNA binding protein 1. (613 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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