(14 nodes) Platelet formation network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSFHEP00000001128	SH2 domain-containing protein. (65 aa)
	ptpn11	Protein tyrosine phosphatase non-receptor type 11a. (505 aa)
	LOC105919611	GATA binding protein 1a. (424 aa)
	LOC105924010	Uncharacterized protein. (323 aa)
	ENSFHEP00000009799	SH2 domain-containing protein. (116 aa)
	LOC105925861	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (612 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (582 aa)
	srf	Serum response factor b. (599 aa)
	nbeal2	Neurobeachin-like 2. (2792 aa)
	LOC105930854	E1A binding protein p300 a. (2838 aa)
	LOC105920540	Uncharacterized protein. (271 aa)
	ENSFHEP00000025106	Uncharacterized protein. (177 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
	ep300	E1A binding protein p300 b. (2738 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105919611	LOC105924010	ENSFHEP00000001731	ENSFHEP00000004618	GATA binding protein 1a.	Uncharacterized protein.	0.669
LOC105919611	LOC105930854	ENSFHEP00000001731	ENSFHEP00000015068	GATA binding protein 1a.	E1A binding protein p300 a.	0.761
LOC105919611	ep300	ENSFHEP00000001731	ENSFHEP00000018961	GATA binding protein 1a.	E1A binding protein p300 b.	0.761
LOC105919611	srf	ENSFHEP00000001731	ENSFHEP00000013718	GATA binding protein 1a.	Serum response factor b.	0.669
LOC105920540	LOC105924010	ENSFHEP00000028444	ENSFHEP00000004618	Uncharacterized protein.	Uncharacterized protein.	0.669
LOC105920540	LOC105930854	ENSFHEP00000028444	ENSFHEP00000015068	Uncharacterized protein.	E1A binding protein p300 a.	0.761
LOC105920540	ep300	ENSFHEP00000028444	ENSFHEP00000018961	Uncharacterized protein.	E1A binding protein p300 b.	0.761
LOC105920540	srf	ENSFHEP00000028444	ENSFHEP00000013718	Uncharacterized protein.	Serum response factor b.	0.669
LOC105924010	LOC105919611	ENSFHEP00000004618	ENSFHEP00000001731	Uncharacterized protein.	GATA binding protein 1a.	0.669
LOC105924010	LOC105920540	ENSFHEP00000004618	ENSFHEP00000028444	Uncharacterized protein.	Uncharacterized protein.	0.669
LOC105924010	srf	ENSFHEP00000004618	ENSFHEP00000013718	Uncharacterized protein.	Serum response factor b.	0.933
LOC105930854	LOC105919611	ENSFHEP00000015068	ENSFHEP00000001731	E1A binding protein p300 a.	GATA binding protein 1a.	0.761
LOC105930854	LOC105920540	ENSFHEP00000015068	ENSFHEP00000028444	E1A binding protein p300 a.	Uncharacterized protein.	0.761
ep300	LOC105919611	ENSFHEP00000018961	ENSFHEP00000001731	E1A binding protein p300 b.	GATA binding protein 1a.	0.761
ep300	LOC105920540	ENSFHEP00000018961	ENSFHEP00000028444	E1A binding protein p300 b.	Uncharacterized protein.	0.761
srf	LOC105919611	ENSFHEP00000013718	ENSFHEP00000001731	Serum response factor b.	GATA binding protein 1a.	0.669
srf	LOC105920540	ENSFHEP00000013718	ENSFHEP00000028444	Serum response factor b.	Uncharacterized protein.	0.669
srf	LOC105924010	ENSFHEP00000013718	ENSFHEP00000004618	Serum response factor b.	Uncharacterized protein.	0.933