17 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	LOC105933079	RAB3B, member RAS oncogene family. (123 aa)
	LOC105933884	Uncharacterized protein. (219 aa)
	LOC105938310	RAB3A, member RAS oncogene family, b. (219 aa)
	rab3c	RAB3C, member RAS oncogene family. (219 aa)
	LOC105932459	RAB11B, member RAS oncogene family, b. (218 aa)
	LOC105932471	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC105936701	Uncharacterized protein. (221 aa)
	rab27b	RAB27B, member RAS oncogene family. (218 aa)
	LOC105930397	RAB25, member RAS oncogene family a. (234 aa)
	ENSFHEP00000007940	Uncharacterized protein. (203 aa)
	LOC105934208	Uncharacterized protein. (218 aa)
	LOC105937254	Uncharacterized protein. (218 aa)
	LOC105939790	RAB11a, member RAS oncogene family, like. (209 aa)
	LOC105939793	RAB25, member RAS oncogene family b. (207 aa)
	rab27a	RAB27A, member RAS oncogene family. (220 aa)
	LOC105938796	RAB11a, member RAS oncogene family. (215 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000007940	LOC105930397	ENSFHEP00000007940	ENSFHEP00000012713	Uncharacterized protein.	RAB25, member RAS oncogene family a.	0.432
ENSFHEP00000007940	LOC105932459	ENSFHEP00000007940	ENSFHEP00000034785	Uncharacterized protein.	RAB11B, member RAS oncogene family, b.	0.470
ENSFHEP00000007940	LOC105932471	ENSFHEP00000007940	ENSFHEP00000020702	Uncharacterized protein.	RAB11B, member RAS oncogene family, a.	0.470
ENSFHEP00000007940	LOC105934208	ENSFHEP00000007940	ENSFHEP00000016653	Uncharacterized protein.	Uncharacterized protein.	0.470
ENSFHEP00000007940	LOC105937254	ENSFHEP00000007940	ENSFHEP00000022953	Uncharacterized protein.	Uncharacterized protein.	0.481
ENSFHEP00000007940	LOC105938796	ENSFHEP00000007940	ENSFHEP00000017883	Uncharacterized protein.	RAB11a, member RAS oncogene family.	0.470
ENSFHEP00000007940	LOC105939790	ENSFHEP00000007940	ENSFHEP00000002245	Uncharacterized protein.	RAB11a, member RAS oncogene family, like.	0.470
ENSFHEP00000007940	LOC105939793	ENSFHEP00000007940	ENSFHEP00000002241	Uncharacterized protein.	RAB25, member RAS oncogene family b.	0.432
ENSFHEP00000007940	rab27a	ENSFHEP00000007940	ENSFHEP00000017240	Uncharacterized protein.	RAB27A, member RAS oncogene family.	0.472
ENSFHEP00000007940	rab27b	ENSFHEP00000007940	ENSFHEP00000010769	Uncharacterized protein.	RAB27B, member RAS oncogene family.	0.475
LOC105930397	ENSFHEP00000007940	ENSFHEP00000012713	ENSFHEP00000007940	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.432
LOC105930397	LOC105933079	ENSFHEP00000012713	ENSFHEP00000020537	RAB25, member RAS oncogene family a.	RAB3B, member RAS oncogene family.	0.432
LOC105930397	LOC105933884	ENSFHEP00000012713	ENSFHEP00000024577	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.475
LOC105930397	LOC105936701	ENSFHEP00000012713	ENSFHEP00000008968	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.475
LOC105930397	LOC105937254	ENSFHEP00000012713	ENSFHEP00000022953	RAB25, member RAS oncogene family a.	Uncharacterized protein.	0.486
LOC105930397	LOC105938310	ENSFHEP00000012713	ENSFHEP00000030849	RAB25, member RAS oncogene family a.	RAB3A, member RAS oncogene family, b.	0.475
LOC105930397	RAB39B	ENSFHEP00000012713	ENSFHEP00000018982	RAB25, member RAS oncogene family a.	RAB39B, member RAS oncogene family.	0.403
LOC105930397	rab27a	ENSFHEP00000012713	ENSFHEP00000017240	RAB25, member RAS oncogene family a.	RAB27A, member RAS oncogene family.	0.486
LOC105930397	rab27b	ENSFHEP00000012713	ENSFHEP00000010769	RAB25, member RAS oncogene family a.	RAB27B, member RAS oncogene family.	0.487
LOC105930397	rab3c	ENSFHEP00000012713	ENSFHEP00000031162	RAB25, member RAS oncogene family a.	RAB3C, member RAS oncogene family.	0.476