(9 nodes) Methylosome network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpf	Small nuclear ribonucleoprotein polypeptide F. (114 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (137 aa)
	SNRPN	Small nuclear ribonucleoprotein polypeptide N. (181 aa)
	prmt5	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (652 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	ENSFHEP00000012172	Small nuclear ribonucleoprotein D1 polypeptide. (82 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	WDR77	WD repeat domain 77. (329 aa)
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (249 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000012172	SNRPN	ENSFHEP00000012172	ENSFHEP00000032693	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein polypeptide N.	0.995
ENSFHEP00000012172	WDR77	ENSFHEP00000012172	ENSFHEP00000006948	Small nuclear ribonucleoprotein D1 polypeptide.	WD repeat domain 77.	0.830
ENSFHEP00000012172	clns1a	ENSFHEP00000012172	ENSFHEP00000007168	Small nuclear ribonucleoprotein D1 polypeptide.	Chloride channel, nucleotide-sensitive, 1A.	0.996
ENSFHEP00000012172	prmt5	ENSFHEP00000012172	ENSFHEP00000015583	Small nuclear ribonucleoprotein D1 polypeptide.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.887
ENSFHEP00000012172	snrpd2	ENSFHEP00000012172	ENSFHEP00000014060	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSFHEP00000012172	snrpd3	ENSFHEP00000012172	ENSFHEP00000009518	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSFHEP00000012172	snrpe	ENSFHEP00000012172	ENSFHEP00000032931	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSFHEP00000012172	snrpf	ENSFHEP00000012172	ENSFHEP00000002464	Small nuclear ribonucleoprotein D1 polypeptide.	Small nuclear ribonucleoprotein polypeptide F.	0.999
SNRPN	ENSFHEP00000012172	ENSFHEP00000032693	ENSFHEP00000012172	Small nuclear ribonucleoprotein polypeptide N.	Small nuclear ribonucleoprotein D1 polypeptide.	0.995
SNRPN	WDR77	ENSFHEP00000032693	ENSFHEP00000006948	Small nuclear ribonucleoprotein polypeptide N.	WD repeat domain 77.	0.514
SNRPN	prmt5	ENSFHEP00000032693	ENSFHEP00000015583	Small nuclear ribonucleoprotein polypeptide N.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.526
SNRPN	snrpd2	ENSFHEP00000032693	ENSFHEP00000014060	Small nuclear ribonucleoprotein polypeptide N.	Small nuclear ribonucleoprotein Sm D2.	0.987
SNRPN	snrpd3	ENSFHEP00000032693	ENSFHEP00000009518	Small nuclear ribonucleoprotein polypeptide N.	Small nuclear ribonucleoprotein Sm D3.	0.996
SNRPN	snrpe	ENSFHEP00000032693	ENSFHEP00000032931	Small nuclear ribonucleoprotein polypeptide N.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.984
SNRPN	snrpf	ENSFHEP00000032693	ENSFHEP00000002464	Small nuclear ribonucleoprotein polypeptide N.	Small nuclear ribonucleoprotein polypeptide F.	0.961
WDR77	ENSFHEP00000012172	ENSFHEP00000006948	ENSFHEP00000012172	WD repeat domain 77.	Small nuclear ribonucleoprotein D1 polypeptide.	0.830
WDR77	SNRPN	ENSFHEP00000006948	ENSFHEP00000032693	WD repeat domain 77.	Small nuclear ribonucleoprotein polypeptide N.	0.514
WDR77	clns1a	ENSFHEP00000006948	ENSFHEP00000007168	WD repeat domain 77.	Chloride channel, nucleotide-sensitive, 1A.	0.992
WDR77	prmt5	ENSFHEP00000006948	ENSFHEP00000015583	WD repeat domain 77.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.999
WDR77	snrpd2	ENSFHEP00000006948	ENSFHEP00000014060	WD repeat domain 77.	Small nuclear ribonucleoprotein Sm D2.	0.612