STRINGSTRING
trub2 trub2 EIF2AK4 EIF2AK4 LARP4B LARP4B ENSFHEP00000027100 ENSFHEP00000027100 ENSFHEP00000027088 ENSFHEP00000027088 nat10 nat10 ENSFHEP00000026175 ENSFHEP00000026175 usp16 usp16 pcif1 pcif1 paip1 paip1 LOC105927738 LOC105927738 poldip3 poldip3 c1qbp c1qbp LOC105931760 LOC105931760 ctif ctif mettl5 mettl5 EIF5A EIF5A rmnd1 rmnd1 LOC105925550 LOC105925550 LOC105937565 LOC105937565 LOC105934698 LOC105934698 rcc1l rcc1l dnajc3 dnajc3 fmr1 fmr1 LOC105926177 LOC105926177 LOC105933104 LOC105933104 LOC105932510 LOC105932510 ENSFHEP00000017354 ENSFHEP00000017354 LOC105924649 LOC105924649 abcf1 abcf1 tent4a tent4a eif2b5 eif2b5 dhx36 dhx36 mettl3 mettl3 guf1 guf1 LOC105940381 LOC105940381 rps9 rps9 LOC105921610 LOC105921610 LOC105933255 LOC105933255 dazl dazl LOC105937043 LOC105937043 nck1 nck1 nck2 nck2 uhmk1 uhmk1 eif4g3 eif4g3 tent4b tent4b mtor mtor LOC105918177 LOC105918177 jmjd4 jmjd4 LOC105920598 LOC105920598 ENSFHEP00000009615 ENSFHEP00000009615 ucn ucn larp6 larp6 LOC105935508 LOC105935508 CYP1C1 CYP1C1 ENSFHEP00000007488 ENSFHEP00000007488 pink1 pink1 ENSFHEP00000005850 ENSFHEP00000005850 eif2s3 eif2s3 pym1 pym1 zcchc4 zcchc4 ngrn ngrn ENSFHEP00000002902 ENSFHEP00000002902 ENSFHEP00000002889 ENSFHEP00000002889 polr2g polr2g cnbp cnbp mif4gd mif4gd cirbp cirbp YTHDF1 YTHDF1 LOC105921533 LOC105921533 impact impact lin28a lin28a LOC105923094 LOC105923094 rps6kb1 rps6kb1 trmt10c trmt10c RPS6KB2 RPS6KB2 elavl1 elavl1 LOC105929788 LOC105929788 cdk5rap1 cdk5rap1 upf3b upf3b LOC105931383 LOC105931383 LOC105935365 LOC105935365 ENSFHEP00000032866 ENSFHEP00000032866 LOC105939367 LOC105939367 LOC105939334 LOC105939334 fastkd2 fastkd2 EIF4G1 EIF4G1 dhx29 dhx29 LOC105935276 LOC105935276
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
trub2TruB pseudouridine (psi) synthase family member 2. (323 aa)
EIF2AK4Eukaryotic translation initiation factor 2 alpha kinase 4. (1654 aa)
LARP4BLa ribonucleoprotein domain family member 4B. (703 aa)
ENSFHEP00000027100UPF3A regulator of nonsense mediated mRNA decay. (184 aa)
ENSFHEP00000027088Uncharacterized protein. (92 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1035 aa)
ENSFHEP00000026175Cytochrome P450, family 1, subfamily C, polypeptide 2; Belongs to the cytochrome P450 family. (524 aa)
usp16Ubiquitin carboxyl-terminal hydrolase 16; Specifically deubiquitinates 'Lys-120' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Deubiquitination of histone H2A is a prerequisite for subsequent phosphorylation at 'Ser-11' of histone H3 (H3S10ph), and is required for chromosome segregation when cells enter into mitosis. Regulates Hox gene expression via histone H2A deubiquitination. Prefers nucleosomal substrates. Does not deubiquitinate histone H2B. (842 aa)
pcif1PDX1 C-terminal inhibiting factor 1. (610 aa)
paip1Poly(A) binding protein interacting protein 1. (401 aa)
LOC105927738Uncharacterized protein. (849 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (475 aa)
c1qbpComplement component 1, q subcomponent binding protein. (286 aa)
LOC105931760La ribonucleoprotein domain family, member 4Aa. (810 aa)
ctifCBP80/20-dependent translation initiation factor. (705 aa)
mettl5Methyltransferase 5-like protein. (208 aa)
EIF5AEukaryotic translation initiation factor 5A. (145 aa)
rmnd1Required for meiotic nuclear division 1 homolog. (410 aa)
LOC105925550Fragile X mental retardation, autosomal homolog 2. (669 aa)
LOC105937565Uncharacterized protein. (1690 aa)
LOC105934698Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (532 aa)
rcc1lRCC1 like. (407 aa)
dnajc3DnaJ (Hsp40) homolog, subfamily C, member 3a. (502 aa)
fmr1Fragile X mental retardation 1. (604 aa)
LOC105926177Cytochrome P450, family 1, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (546 aa)
LOC105933104Forkhead box A3. (463 aa)
LOC105932510Cytochrome C oxidase assembly factor 3a. (99 aa)
ENSFHEP00000017354Mitochondrial ribosomal protein S27. (178 aa)
LOC105924649Tr-type G domain-containing protein. (126 aa)
abcf1ATP-binding cassette, sub-family F (GCN20), member 1. (761 aa)
tent4aTerminal nucleotidyltransferase 4A. (824 aa)
eif2b5Eukaryotic translation initiation factor 2B, subunit 5 epsilon. (710 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1013 aa)
mettl3Methyltransferase like 3; Belongs to the MT-A70-like family. (578 aa)
guf1Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (673 aa)
LOC105940381Cytochrome c oxidase assembly protein 3, mitochondrial. (91 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
LOC105921610YTH N(6)-methyladenosine RNA binding protein 3. (603 aa)
LOC105933255Ubiquinol-cytochrome c reductase complex assembly factor 2. (217 aa)
dazlDeleted in azoospermia-like. (217 aa)
LOC105937043La ribonucleoprotein domain family, member 4Ab. (726 aa)
nck1Cytoplasmic protein. (396 aa)
nck2Cytoplasmic protein. (395 aa)
uhmk1U2AF homology motif (UHM) kinase 1. (435 aa)
eif4g3Eukaryotic translation initiation factor 4 gamma, 3a. (1754 aa)
tent4bNon-canonical poly(A) RNA polymerase PAPD5. (680 aa)
mtorSerine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2495 aa)
LOC105918177FAST kinase domains 3. (658 aa)
jmjd4Jumonji domain containing 4. (431 aa)
LOC105920598HTH La-type RNA-binding domain-containing protein. (445 aa)
ENSFHEP00000009615DRBM domain-containing protein. (391 aa)
ucnUrotensin 1. (144 aa)
larp6La ribonucleoprotein domain family, member 6a. (684 aa)
LOC105935508La ribonucleoprotein domain family, member 1B. (1121 aa)
CYP1C1Cytochrome P450, family 1, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family. (529 aa)
ENSFHEP00000007488RPOL4c domain-containing protein. (106 aa)
pink1PTEN induced kinase 1. (585 aa)
ENSFHEP00000005850Eukaryotic translation initiation factor 5A. (159 aa)
eif2s3Eukaryotic translation initiation factor 2, subunit 3 gamma. (392 aa)
pym1PYM homolog 1, exon junction complex associated factor. (214 aa)
zcchc4Zinc finger CCHC domain-containing protein 4. (491 aa)
ngrnNeugrin, neurite outgrowth associated. (298 aa)
ENSFHEP00000002902Uncharacterized protein. (185 aa)
ENSFHEP00000002889Fragile X mental retardation, autosomal homolog 1. (259 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
cnbpCCHC-type zinc finger, nucleic acid binding protein a. (166 aa)
mif4gdMIF4G domain containing a. (221 aa)
cirbpCold inducible RNA binding protein b. (168 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (618 aa)
LOC105921533RRM domain-containing protein. (297 aa)
impactImpact RWD domain protein. (339 aa)
lin28aLin-28 homolog A. (202 aa)
LOC105923094ELAV-like protein; Belongs to the RRM elav family. (314 aa)
rps6kb1Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (509 aa)
trmt10ctRNA methyltransferase 10C, mitochondrial RNase P subunit. (507 aa)
RPS6KB2Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (471 aa)
elavl1ELAV-like protein; Belongs to the RRM elav family. (348 aa)
LOC105929788DnaJ (Hsp40) homolog, subfamily C, member 3b. (499 aa)
cdk5rap1CDK5 regulatory subunit associated protein 1. (579 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (459 aa)
LOC105931383Hyaluronan binding protein 4. (355 aa)
LOC105935365Eukaryotic translation initiation factor 5A. (162 aa)
ENSFHEP00000032866Proline rich 16. (218 aa)
LOC105939367Uncharacterized protein. (276 aa)
LOC105939334La ribonucleoprotein domain family, member 1. (660 aa)
fastkd2FAST kinase domains 2. (662 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1. (1669 aa)
dhx29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1389 aa)
LOC105935276YTH N(6)-methyladenosine RNA binding protein 1. (613 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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