STRINGSTRING
ston1 ston1 pdgfc pdgfc LOC105922744 LOC105922744 LOC105918269 LOC105918269 LOC105915406 LOC105915406 LOC105930985 LOC105930985 LOC105921783 LOC105921783 pdgfrb pdgfrb sgpl1 sgpl1 pdgfrl pdgfrl flt3 flt3 LOC105921022 LOC105921022 pdgfra pdgfra zfand5 zfand5 LOC105933547 LOC105933547 LOC105928387 LOC105928387 LOC105935845 LOC105935845 vegfa vegfa LOC105938432 LOC105938432 cspg4 cspg4 LOC105930240 LOC105930240 abl1 abl1 nrp1 nrp1 smpd3 smpd3 pdgfd pdgfd abl2 abl2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ston1Stonin-1; May be involved in the endocytic machinery. (709 aa)
pdgfcPlatelet derived growth factor c; Belongs to the PDGF/VEGF growth factor family. (391 aa)
LOC105922744Arrestin_N domain-containing protein. (278 aa)
LOC105918269Platelet-derived growth factor alpha polypeptide b; Belongs to the PDGF/VEGF growth factor family. (228 aa)
LOC105915406Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (561 aa)
LOC105930985Uncharacterized protein. (2398 aa)
LOC105921783Thioredoxin interacting protein b. (380 aa)
pdgfrbPlatelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1020 aa)
sgpl1Sphingosine-1-phosphate lyase 1. (565 aa)
pdgfrlPlatelet-derived growth factor receptor-like. (383 aa)
flt3Fms-related tyrosine kinase 3. (714 aa)
LOC105921022PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (199 aa)
pdgfraPlatelet-derived growth factor receptor, alpha polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (987 aa)
zfand5Zinc finger, AN1-type domain 5a. (205 aa)
LOC105933547Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family. (523 aa)
LOC105928387Si:dkey-193c22.2. (2415 aa)
LOC105935845Ig-like domain-containing protein. (377 aa)
vegfaVascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (214 aa)
LOC105938432Cysteine-serine-rich nuclear protein 1b. (570 aa)
cspg4Chondroitin sulfate proteoglycan 4. (2250 aa)
LOC105930240Cysteine-serine-rich nuclear protein 1a. (576 aa)
abl1Tyrosine-protein kinase. (1105 aa)
nrp1Neuropilin; Belongs to the neuropilin family. (924 aa)
smpd3Sphingomyelin phosphodiesterase 3, neutral. (706 aa)
pdgfdPlatelet derived growth factor d. (363 aa)
abl2Tyrosine-protein kinase. (1188 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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