(15 nodes) Sensory perception of taste network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	calhm1	Calcium homeostasis modulator 1. (351 aa)
	LOC105927084	Olfactory receptor class A related 4. (360 aa)
	lef1	Lymphoid enhancer-binding factor 1. (424 aa)
	LOC105915450	Receptor-transporting protein 3. (159 aa)
	ENSFHEP00000027816	Uncharacterized protein. (162 aa)
	p2rx3	Uncharacterized protein. (328 aa)
	calhm3	Calcium homeostasis modulator protein 3. (329 aa)
	p2rx2	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. (418 aa)
	LOC105930383	zf-3CxxC domain-containing protein. (175 aa)
	LOC105933694	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1. (350 aa)
	LOC105931793	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2. (350 aa)
	ca6	Carbonic anhydrase-related protein 10; Belongs to the alpha-carbonic anhydrase family. (533 aa)
	ENSFHEP00000008636	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (78 aa)
	ENSFHEP00000010216	Uncharacterized protein. (49 aa)
	LOC105921955	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (67 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000010216	p2rx2	ENSFHEP00000010216	ENSFHEP00000028682	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.829
ENSFHEP00000027816	p2rx2	ENSFHEP00000027816	ENSFHEP00000028682	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.829
LOC105915450	LOC105921955	ENSFHEP00000025896	ENSFHEP00000019153	Receptor-transporting protein 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.422
LOC105921955	LOC105915450	ENSFHEP00000019153	ENSFHEP00000025896	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Receptor-transporting protein 3.	0.422
LOC105921955	LOC105930383	ENSFHEP00000019153	ENSFHEP00000029035	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	zf-3CxxC domain-containing protein.	0.422
LOC105921955	LOC105931793	ENSFHEP00000019153	ENSFHEP00000004358	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.854
LOC105921955	LOC105933694	ENSFHEP00000019153	ENSFHEP00000033282	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.854
LOC105930383	LOC105921955	ENSFHEP00000029035	ENSFHEP00000019153	zf-3CxxC domain-containing protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.422
LOC105931793	LOC105921955	ENSFHEP00000004358	ENSFHEP00000019153	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.854
LOC105931793	LOC105933694	ENSFHEP00000004358	ENSFHEP00000033282	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.966
LOC105933694	LOC105921955	ENSFHEP00000033282	ENSFHEP00000019153	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.854
LOC105933694	LOC105931793	ENSFHEP00000033282	ENSFHEP00000004358	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.966
p2rx2	ENSFHEP00000010216	ENSFHEP00000028682	ENSFHEP00000010216	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.829
p2rx2	ENSFHEP00000027816	ENSFHEP00000028682	ENSFHEP00000027816	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.829
p2rx2	p2rx3	ENSFHEP00000028682	ENSFHEP00000027888	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.839
p2rx3	p2rx2	ENSFHEP00000027888	ENSFHEP00000028682	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.839