(8 nodes) Cardiac myofibril assembly network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nkx2-5	NK2 homeobox 5. (313 aa)
	LOC105924010	Uncharacterized protein. (323 aa)
	adprhl1	ADP-ribosylhydrolase like 1. (358 aa)
	tcap	Titin-cap (telethonin). (179 aa)
	srf	Serum response factor b. (599 aa)
	ENSFHEP00000026549	LIM zinc-binding domain-containing protein. (112 aa)
	neb	Nebulin. (6127 aa)
	csrp3	Cysteine and glycine-rich protein 3 (cardiac LIM protein). (191 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000026549	csrp3	ENSFHEP00000026549	ENSFHEP00000034557	LIM zinc-binding domain-containing protein.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.735
ENSFHEP00000026549	neb	ENSFHEP00000026549	ENSFHEP00000030755	LIM zinc-binding domain-containing protein.	Nebulin.	0.498
ENSFHEP00000026549	tcap	ENSFHEP00000026549	ENSFHEP00000011585	LIM zinc-binding domain-containing protein.	Titin-cap (telethonin).	0.490
LOC105924010	nkx2-5	ENSFHEP00000004618	ENSFHEP00000006401	Uncharacterized protein.	NK2 homeobox 5.	0.549
LOC105924010	srf	ENSFHEP00000004618	ENSFHEP00000013718	Uncharacterized protein.	Serum response factor b.	0.933
csrp3	ENSFHEP00000026549	ENSFHEP00000034557	ENSFHEP00000026549	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	LIM zinc-binding domain-containing protein.	0.735
csrp3	neb	ENSFHEP00000034557	ENSFHEP00000030755	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Nebulin.	0.439
csrp3	tcap	ENSFHEP00000034557	ENSFHEP00000011585	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	Titin-cap (telethonin).	0.699
neb	ENSFHEP00000026549	ENSFHEP00000030755	ENSFHEP00000026549	Nebulin.	LIM zinc-binding domain-containing protein.	0.498
neb	csrp3	ENSFHEP00000030755	ENSFHEP00000034557	Nebulin.	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.439
neb	tcap	ENSFHEP00000030755	ENSFHEP00000011585	Nebulin.	Titin-cap (telethonin).	0.592
nkx2-5	LOC105924010	ENSFHEP00000006401	ENSFHEP00000004618	NK2 homeobox 5.	Uncharacterized protein.	0.549
nkx2-5	srf	ENSFHEP00000006401	ENSFHEP00000013718	NK2 homeobox 5.	Serum response factor b.	0.549
srf	LOC105924010	ENSFHEP00000013718	ENSFHEP00000004618	Serum response factor b.	Uncharacterized protein.	0.933
srf	nkx2-5	ENSFHEP00000013718	ENSFHEP00000006401	Serum response factor b.	NK2 homeobox 5.	0.549
tcap	ENSFHEP00000026549	ENSFHEP00000011585	ENSFHEP00000026549	Titin-cap (telethonin).	LIM zinc-binding domain-containing protein.	0.490
tcap	csrp3	ENSFHEP00000011585	ENSFHEP00000034557	Titin-cap (telethonin).	Cysteine and glycine-rich protein 3 (cardiac LIM protein).	0.699
tcap	neb	ENSFHEP00000011585	ENSFHEP00000030755	Titin-cap (telethonin).	Nebulin.	0.592