STRINGSTRING
sox5 sox5 LOC105916278 LOC105916278 LOC105926254 LOC105926254 LOC105930794 LOC105930794 LOC105931927 LOC105931927 bmpr2 bmpr2 pkdcc pkdcc ccn1 ccn1 LOC105931924 LOC105931924 bmp4 bmp4 LOC105931217 LOC105931217 LOC105939150 LOC105939150 LOC105915540 LOC105915540 LOC105939829 LOC105939829
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sox5SRY-box transcription factor 5. (759 aa)
LOC105916278SRY-box transcription factor 6. (775 aa)
LOC105926254HMG box domain-containing protein. (779 aa)
LOC105930794Bone morphogenetic protein 10, like. (458 aa)
LOC105931927Transmembrane anterior posterior transformation 1a. (592 aa)
bmpr2Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1050 aa)
pkdccProtein kinase domain containing, cytoplasmic b. (493 aa)
ccn1Cellular communication network factor 1. (375 aa)
LOC105931924Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (210 aa)
bmp4Bone morphogenetic protein 4. (399 aa)
LOC105931217Transmembrane anterior posterior transformation 1b. (572 aa)
LOC105939150Bone morphogenetic protein 16. (476 aa)
LOC105915540Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (732 aa)
LOC105939829Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family. (210 aa)
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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