33 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105930774	Mothers against decapentaplegic homolog. (393 aa)
	LOC105932547	Sprouty RTK signaling antagonist 2. (347 aa)
	itgb1bp1	Integrin beta-1-binding protein 1. (288 aa)
	LOC105919410	Elastin microfibril interfacer 1b. (1116 aa)
	vrk3	Inactive serine/threonine-protein kinase VRK3. (517 aa)
	tnip1	TNFAIP3-interacting protein 1. (694 aa)
	SPRY3	Sprouty RTK signaling antagonist 3. (291 aa)
	PTPN2	Protein tyrosine phosphatase non-receptor type 2. (188 aa)
	LOC105932178	Si:dkey-175m17.7. (862 aa)
	cunh3orf33	C18h3orf33 homolog (H. sapiens). (267 aa)
	ptpn1	Tyrosine-protein phosphatase non-receptor type. (437 aa)
	spry4	Sprouty homolog 4 (Drosophila). (283 aa)
	LOC105929477	Si:ch211-153j24.3. (318 aa)
	LOC105927314	WNK lysine deficient protein kinase 2. (2535 aa)
	ptpn2	Tyrosine-protein phosphatase non-receptor type. (417 aa)
	spry1	Sprouty homolog 1, antagonist of FGF signaling (Drosophila). (357 aa)
	TIMP3	TIMP metallopeptidase inhibitor 3. (214 aa)
	flcn	Folliculin. (564 aa)
	phb	Prohibitin. (271 aa)
	LOC105920529	Mothers against decapentaplegic homolog. (520 aa)
	LOC105937002	Elastin microfibril interfacer 1a. (970 aa)
	errfi1	ERBB receptor feedback inhibitor 1a. (422 aa)
	dusp10	Dual specificity protein phosphatase 10; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (472 aa)
	ENSFHEP00000021949	Inhibitor_Mig-6 domain-containing protein. (368 aa)
	ENSFHEP00000024585	Uncharacterized protein. (333 aa)
	atf3	Activating transcription factor 3. (213 aa)
	pin1	Peptidyl-prolyl cis-trans isomerase. (156 aa)
	LOC105926616	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (387 aa)
	LOC105921341	MH2 domain-containing protein. (222 aa)
	ENSFHEP00000034755	MH1 domain-containing protein. (154 aa)
	ptprc	Uncharacterized protein. (989 aa)
	spred3	Sprouty related EVH1 domain containing 3. (519 aa)
	dab2	DAB adaptor protein 2. (769 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000034755	LOC105920529	ENSFHEP00000034755	ENSFHEP00000011523	MH1 domain-containing protein.	Mothers against decapentaplegic homolog.	0.715
ENSFHEP00000034755	LOC105921341	ENSFHEP00000034755	ENSFHEP00000034764	MH1 domain-containing protein.	MH2 domain-containing protein.	0.927
LOC105920529	ENSFHEP00000034755	ENSFHEP00000011523	ENSFHEP00000034755	Mothers against decapentaplegic homolog.	MH1 domain-containing protein.	0.715
LOC105920529	LOC105921341	ENSFHEP00000011523	ENSFHEP00000034764	Mothers against decapentaplegic homolog.	MH2 domain-containing protein.	0.900
LOC105920529	LOC105930774	ENSFHEP00000011523	ENSFHEP00000032911	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.934
LOC105921341	ENSFHEP00000034755	ENSFHEP00000034764	ENSFHEP00000034755	MH2 domain-containing protein.	MH1 domain-containing protein.	0.927
LOC105921341	LOC105920529	ENSFHEP00000034764	ENSFHEP00000011523	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.900
LOC105921341	LOC105930774	ENSFHEP00000034764	ENSFHEP00000032911	MH2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.907
LOC105930774	LOC105920529	ENSFHEP00000032911	ENSFHEP00000011523	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.934
LOC105930774	LOC105921341	ENSFHEP00000032911	ENSFHEP00000034764	Mothers against decapentaplegic homolog.	MH2 domain-containing protein.	0.907
LOC105932178	vrk3	ENSFHEP00000004875	ENSFHEP00000010094	Si:dkey-175m17.7.	Inactive serine/threonine-protein kinase VRK3.	0.535
LOC105932547	spry1	ENSFHEP00000032767	ENSFHEP00000031544	Sprouty RTK signaling antagonist 2.	Sprouty homolog 1, antagonist of FGF signaling (Drosophila).	0.744
PTPN2	ptprc	ENSFHEP00000006912	ENSFHEP00000034551	Protein tyrosine phosphatase non-receptor type 2.	Uncharacterized protein.	0.522
SPRY3	spry1	ENSFHEP00000004917	ENSFHEP00000031544	Sprouty RTK signaling antagonist 3.	Sprouty homolog 1, antagonist of FGF signaling (Drosophila).	0.697
dusp10	vrk3	ENSFHEP00000021005	ENSFHEP00000010094	Dual specificity protein phosphatase 10; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Inactive serine/threonine-protein kinase VRK3.	0.535
ptpn1	ptprc	ENSFHEP00000004693	ENSFHEP00000034551	Tyrosine-protein phosphatase non-receptor type.	Uncharacterized protein.	0.522
ptpn2	ptprc	ENSFHEP00000032355	ENSFHEP00000034551	Tyrosine-protein phosphatase non-receptor type.	Uncharacterized protein.	0.522
ptprc	PTPN2	ENSFHEP00000034551	ENSFHEP00000006912	Uncharacterized protein.	Protein tyrosine phosphatase non-receptor type 2.	0.522
ptprc	ptpn1	ENSFHEP00000034551	ENSFHEP00000004693	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type.	0.522
ptprc	ptpn2	ENSFHEP00000034551	ENSFHEP00000032355	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type.	0.522