(64 nodes) Large ribosomal subunit network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (165 aa)
	mrpl47	39S ribosomal protein L47, mitochondrial. (267 aa)
	mrpl34	Mitochondrial ribosomal protein L34. (126 aa)
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (342 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	mrpl13	39S ribosomal protein L13, mitochondrial. (179 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (279 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	mrpl45	Mitochondrial ribosomal protein L45. (318 aa)
	mrps30	Mitochondrial ribosomal protein S30. (422 aa)
	mrpl41	Mitochondrial ribosomal protein L41. (135 aa)
	rpl31	Ribosomal protein L31. (124 aa)
	RPL30	Ribosomal protein L30. (95 aa)
	mrpl52	Mitochondrial ribosomal protein L52. (128 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	mrpl42	Mitochondrial ribosomal protein L42. (145 aa)
	ENSFHEP00000032075	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	mrpl12	Mitochondrial ribosomal protein L12. (185 aa)
	mrpl51	Mitochondrial ribosomal protein L51. (131 aa)
	mrpl53	Mitochondrial ribosomal protein L53. (108 aa)
	ENSFHEP00000027906	Mitochondrial ribosomal protein L15. (152 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	mrpl35	Mitochondrial ribosomal protein L35. (174 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (147 aa)
	mrpl37	Mitochondrial ribosomal protein L37. (433 aa)
	mrpl28	Mitochondrial ribosomal protein L28. (252 aa)
	mrpl10	39S ribosomal protein L10, mitochondrial. (252 aa)
	rpl4	Ribosomal protein L4. (368 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (148 aa)
	ENSFHEP00000022745	Mitochondrial ribosomal protein L21. (204 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (183 aa)
	rpl32	Ribosomal protein L32. (93 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (286 aa)
	rpl35	Ribosomal protein L35. (123 aa)
	mrpl39	Mitochondrial ribosomal protein L39. (366 aa)
	mrpl48	Mitochondrial ribosomal protein L48. (210 aa)
	LOC105918539	Mitochondrial transcription termination factor 4. (345 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (212 aa)
	mrpl58	Mitochondrial ribosomal protein L58. (196 aa)
	ENSFHEP00000016354	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	mrpl38	Mitochondrial ribosomal protein L38. (386 aa)
	mpv17l2	MPV17 mitochondrial membrane protein-like 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (218 aa)
	mrpl22	39S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family. (209 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	mrpl16	Mitochondrial ribosomal protein L16. (263 aa)
	mrpl46	39S ribosomal protein L46, mitochondrial. (293 aa)
	LOC105921137	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family. (149 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	mrpl30	Mitochondrial ribosomal protein L30. (188 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (174 aa)
	rpl10	Ribosomal protein L10. (215 aa)
	LOC105918212	Mitochondrial ribosomal protein L23. (205 aa)
	mrpl43	Mitochondrial ribosomal protein L43. (158 aa)
	mrpl24	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family. (265 aa)
	mrpl33	Mitochondrial ribosomal protein L33. (63 aa)
	mrpl14	39S ribosomal protein L14, mitochondrial. (155 aa)
	rpl6	Ribosomal protein L6. (259 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rpl9	Ribosomal protein L9. (193 aa)
	mrpl55	Zgc:171480. (139 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (244 aa)
	ccdc32	Coiled-coil domain containing 32. (191 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000016354	ENSFHEP00000022745	ENSFHEP00000016354	ENSFHEP00000022745	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L21.	0.999
ENSFHEP00000016354	ENSFHEP00000027906	ENSFHEP00000016354	ENSFHEP00000027906	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L15.	0.999
ENSFHEP00000016354	LOC105918212	ENSFHEP00000016354	ENSFHEP00000009722	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L23.	0.994
ENSFHEP00000016354	LOC105918539	ENSFHEP00000016354	ENSFHEP00000018260	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial transcription termination factor 4.	0.714
ENSFHEP00000016354	MRPL49	ENSFHEP00000016354	ENSFHEP00000010310	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L49.	0.997
ENSFHEP00000016354	RPL30	ENSFHEP00000016354	ENSFHEP00000032905	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L30.	0.428
ENSFHEP00000016354	ccdc32	ENSFHEP00000016354	ENSFHEP00000006417	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Coiled-coil domain containing 32.	0.837
ENSFHEP00000016354	mrpl10	ENSFHEP00000016354	ENSFHEP00000024377	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	39S ribosomal protein L10, mitochondrial.	0.957
ENSFHEP00000016354	mrpl11	ENSFHEP00000016354	ENSFHEP00000013983	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSFHEP00000016354	mrpl12	ENSFHEP00000016354	ENSFHEP00000029677	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L12.	0.999
ENSFHEP00000016354	mrpl13	ENSFHEP00000016354	ENSFHEP00000001151	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	39S ribosomal protein L13, mitochondrial.	0.999
ENSFHEP00000016354	mrpl14	ENSFHEP00000016354	ENSFHEP00000004196	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	39S ribosomal protein L14, mitochondrial.	0.984
ENSFHEP00000016354	mrpl16	ENSFHEP00000016354	ENSFHEP00000013841	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L16.	0.999
ENSFHEP00000016354	mrpl17	ENSFHEP00000016354	ENSFHEP00000005773	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
ENSFHEP00000016354	mrpl18	ENSFHEP00000016354	ENSFHEP00000017121	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L18.	0.919
ENSFHEP00000016354	mrpl19	ENSFHEP00000016354	ENSFHEP00000020904	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L19.	0.999
ENSFHEP00000016354	mrpl2	ENSFHEP00000016354	ENSFHEP00000001280	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L2.	0.999
ENSFHEP00000016354	mrpl20	ENSFHEP00000016354	ENSFHEP00000023635	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.999
ENSFHEP00000016354	mrpl22	ENSFHEP00000016354	ENSFHEP00000014765	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	39S ribosomal protein L22, mitochondrial; Belongs to the universal ribosomal protein uL22 family.	0.999
ENSFHEP00000016354	mrpl24	ENSFHEP00000016354	ENSFHEP00000009167	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.997