10 items (Fundulus heteroclitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wdr24	WD repeat domain 24. (706 aa)
	nprl3	Nitrogen permease regulator 3-like protein. (599 aa)
	mpg	N-methylpurine DNA glycosylase. (290 aa)
	depdc5	DEP domain containing 5. (883 aa)
	ENSFHEP00000017385	Uncharacterized protein. (57 aa)
	ENSFHEP00000017412	Uncharacterized protein. (55 aa)
	nprl2	NPR2 like, GATOR1 complex subunit. (274 aa)
	mettl25	Methyltransferase like 25. (557 aa)
	castor2	Cytosolic arginine sensor for mTORC1 subunit 2. (290 aa)
	wdr59	WD repeat domain 59. (941 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000017385	depdc5	ENSFHEP00000017385	ENSFHEP00000005599	Uncharacterized protein.	DEP domain containing 5.	0.996
ENSFHEP00000017385	nprl3	ENSFHEP00000017385	ENSFHEP00000001816	Uncharacterized protein.	Nitrogen permease regulator 3-like protein.	0.996
ENSFHEP00000017385	wdr24	ENSFHEP00000017385	ENSFHEP00000000983	Uncharacterized protein.	WD repeat domain 24.	0.996
ENSFHEP00000017385	wdr59	ENSFHEP00000017385	ENSFHEP00000025365	Uncharacterized protein.	WD repeat domain 59.	0.996
ENSFHEP00000017412	depdc5	ENSFHEP00000017412	ENSFHEP00000005599	Uncharacterized protein.	DEP domain containing 5.	0.979
ENSFHEP00000017412	nprl3	ENSFHEP00000017412	ENSFHEP00000001816	Uncharacterized protein.	Nitrogen permease regulator 3-like protein.	0.979
ENSFHEP00000017412	wdr24	ENSFHEP00000017412	ENSFHEP00000000983	Uncharacterized protein.	WD repeat domain 24.	0.979
ENSFHEP00000017412	wdr59	ENSFHEP00000017412	ENSFHEP00000025365	Uncharacterized protein.	WD repeat domain 59.	0.979
castor2	depdc5	ENSFHEP00000020866	ENSFHEP00000005599	Cytosolic arginine sensor for mTORC1 subunit 2.	DEP domain containing 5.	0.623
castor2	nprl3	ENSFHEP00000020866	ENSFHEP00000001816	Cytosolic arginine sensor for mTORC1 subunit 2.	Nitrogen permease regulator 3-like protein.	0.623
castor2	wdr24	ENSFHEP00000020866	ENSFHEP00000000983	Cytosolic arginine sensor for mTORC1 subunit 2.	WD repeat domain 24.	0.905
castor2	wdr59	ENSFHEP00000020866	ENSFHEP00000025365	Cytosolic arginine sensor for mTORC1 subunit 2.	WD repeat domain 59.	0.911
depdc5	ENSFHEP00000017385	ENSFHEP00000005599	ENSFHEP00000017385	DEP domain containing 5.	Uncharacterized protein.	0.996
depdc5	ENSFHEP00000017412	ENSFHEP00000005599	ENSFHEP00000017412	DEP domain containing 5.	Uncharacterized protein.	0.979
depdc5	castor2	ENSFHEP00000005599	ENSFHEP00000020866	DEP domain containing 5.	Cytosolic arginine sensor for mTORC1 subunit 2.	0.623
depdc5	mettl25	ENSFHEP00000005599	ENSFHEP00000019565	DEP domain containing 5.	Methyltransferase like 25.	0.541
depdc5	nprl2	ENSFHEP00000005599	ENSFHEP00000017420	DEP domain containing 5.	NPR2 like, GATOR1 complex subunit.	0.996
depdc5	nprl3	ENSFHEP00000005599	ENSFHEP00000001816	DEP domain containing 5.	Nitrogen permease regulator 3-like protein.	0.999
depdc5	wdr24	ENSFHEP00000005599	ENSFHEP00000000983	DEP domain containing 5.	WD repeat domain 24.	0.999
depdc5	wdr59	ENSFHEP00000005599	ENSFHEP00000025365	DEP domain containing 5.	WD repeat domain 59.	0.999